Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0905 ATGGGAAACCTTAGTCCTACATCTTCAAAGTTTCCTTCCATTCTTCTTATCATTCTCATATTTCTCATCTCCTTCTCTTTTGCAACTTCCAACACCCAGAACCTTTTGCGAAGAGGCTCCTCTCTCTCTGTCGAAGATGATTCCGACTACATCACCTCCCCAGACAAATCATTCACTTGTGGTTTCTATGGGATGGGGAAAAATGCTTACTGGTTTTCGATATGGTTCACAAATTCAAAGGAAAAAACTGTTGTTTGGACGGCCAATCGAAACACACCTGTCAATGGCCGGGGCTCCAGAATTTGGCTGCAGCGAGATGGCACCATGATTCTAAGGGCTGCTGATGGCTCAACTGTTTGGGAGACGAACACTACCTCCACAGATGTTGATCGAGCAGAGCTTTTGGACACTGGAAACCTTGTTTTGAAGGACCCGCGGGGTAAAGTTCTATGGCAAAGCTTTGATTTTCCTACTGATACTCTTCTGCCAAACCAAATCCTTACTACAAGCACAAAGCTGATCTCTATAATCAGAAGAGAGGATTTTTCCTCTGGTCATTTTTACTTCTTTTTTTATAATGACAATGTCTTGAGAATGATCTATGATGGGCCTGACATTTCAAGCTTGTATTGGCCTAATCCTGATTGGGATGTTTTCCAAAATAGAAGAACAAACTATAACAGTAGCAGAATTGCTGTTTTAGATGAAATGGGGAGGTTTCTTTCGAGTGATAGAATGTCTTTCAAAGCTTCTGACATGGGTTTTGGAGTCAAAAGGAGGCTGACAATGGACTACGATGGAAACCTGAGACTCTATAGCTTAAACCATTCCTCGGGATTATGGAATATATCATGGGAAGCTCTTAGCCAACAGTGTAAAGTGCATGGGCTATGTGGTAGAAATGGGATTTGTATTTATACACCAGAACCCAAGTGTTCATGTCCTCCGGGCTATGAAGTAAGTGACCCAAGTGACTGGAGCAAAGGTTGCAAATCAAAGTTCAACCATAGCTGTTCCCAACCACAGCAGGTAAAATTTGTGGAGCTTCCCCAGACCGATTACTATGGGTTTGATCTCGATTATAGCCCATCTGTTTCATTAGAAGCTTGCAGGAAAATCTGCTTGGAGGATTGCCTTTGCCAAGGATTCGCCTACAGGCTAACAGGAGAAGGGAACTGTTTCGCAAAAAGTACCCTTTTCAATGGCTACAAGTCCTCCAACTTCCCTGGGAGTTTATATTTAAAACTGCCTGTGGATGTCCAAACGTCAGCACCCACTGTCCTTAATGGTTCTGATCTCATATGCGAGTCCAAGGAGGTTGAGGTTGTGCACAGTTCTTCTGTGTATGACACTGCCAGTAAACAGATGAGATGGGTTTATCTCTACTCATTTGCTTCTGCCATTGGTGCCATAGAAGTTCTCTTAATTGTGTCAGGTTGGTGGTTTCTTTTCAGGGTACATAATGTGCCATCTTCAGCTGAAAATGGATATGGTCCGATATCAAGCCAGTTCAGGAGATTTAGCTACACCGAACTCAAGAAGGCAACCAACAATTTCAAAGTGGAGCTTGGAAGAGGAGGCTTTGGGGCTGTTTATAAGGGTGTTTTGGAGGATGAAAGGGCAGTAGCAGTGAAGAAATTGGGAGATGCCACTCAAGGGGAAGGGGAGTTTTGGGCTGAAGTAAGCACAATCGGAAAAATCTATCACATGAACCTAGTCAGAATGTGGGGATTCTGTTCAGAGGGTAGACACAGACTTGTGGTCTACGAGCATGTAGAAAATCTGTCACTGGATAAGCATCTCTTCAGCACGAGTTGTCTGGGATGGAAAGAGAGGTTTAACGTTGCAGTGGGGACAGCGAGGGGTTTAGCCTACCTTCACCATGAGTGTCTAGAATGGGTTATCCACTGTGACGTGAAGCCTGAAAATATACTTCTAGACAACGGGTTTGAACCAAAGATTGCAGATTTTGGGCTAGCCAAGCTGTCTCAGAGAGGTGGCCCTGGTTCAGGAGAATTCTCTAGGATTCGGGGGACTAAAGGGTACATGGCTCCAGAGTGGGCTATGAATCTTCCAATTACGGCAAAAGTTGATGTTTATAGCTATGGAGTTGTGGTTTTAGAGATGGTGAGGGGAATTCGGCTTTTGAAATGGGTGGGTGAGGATGGCGAGGAGCAGGAAGCTGAGCTGACGAGGTTTGTCAGGGCAGTGAAAAGGAAAATTCAATATGGAGAAGACAATTGGATAGAGGATACAGTGGACCCAAGATTGAAGGAGAAGTTTAGCAGGCAGCAGGCAGCCATGATGGTCAAAATAGGTATTTCTTGTGTGGAGGAAGATAGAATTAAACGACCAACAATGGCCACCGTAGTGCAAGTTCTACTGGAATGTGAAGATGAAGCCCAAGTCCAAACCCTGGACTTGGAGTAA 2430 0.4432 MGNLSPTSSKFPSILLIILIFLISFSFATSNTQNLLRRGSSLSVEDDSDYITSPDKSFTCGFYGMGKNAYWFSIWFTNSKEKTVVWTANRNTPVNGRGSRIWLQRDGTMILRAADGSTVWETNTTSTDVDRAELLDTGNLVLKDPRGKVLWQSFDFPTDTLLPNQILTTSTKLISIIRREDFSSGHFYFFFYNDNVLRMIYDGPDISSLYWPNPDWDVFQNRRTNYNSSRIAVLDEMGRFLSSDRMSFKASDMGFGVKRRLTMDYDGNLRLYSLNHSSGLWNISWEALSQQCKVHGLCGRNGICIYTPEPKCSCPPGYEVSDPSDWSKGCKSKFNHSCSQPQQVKFVELPQTDYYGFDLDYSPSVSLEACRKICLEDCLCQGFAYRLTGEGNCFAKSTLFNGYKSSNFPGSLYLKLPVDVQTSAPTVLNGSDLICESKEVEVVHSSSVYDTASKQMRWVYLYSFASAIGAIEVLLIVSGWWFLFRVHNVPSSAENGYGPISSQFRRFSYTELKKATNNFKVELGRGGFGAVYKGVLEDERAVAVKKLGDATQGEGEFWAEVSTIGKIYHMNLVRMWGFCSEGRHRLVVYEHVENLSLDKHLFSTSCLGWKERFNVAVGTARGLAYLHHECLEWVIHCDVKPENILLDNGFEPKIADFGLAKLSQRGGPGSGEFSRIRGTKGYMAPEWAMNLPITAKVDVYSYGVVVLEMVRGIRLLKWVGEDGEEQEAELTRFVRAVKRKIQYGEDNWIEDTVDPRLKEKFSRQQAAMMVKIGISCVEEDRIKRPTMATVVQVLLECEDEAQVQTLDLE* 810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0905 809 FunFam S-receptor-like serine/threonine-protein kinase 487 591 - -
Vvi8g0905 809 CDD PAN_AP_plant 337 417 - -
Vvi8g0905 809 ProSiteProfiles Protein kinase domain profile. 517 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0905 809 FunFam Serine/threonine-protein kinase 592 802 - -
Vvi8g0905 809 ProSitePatterns Serine/Threonine protein kinases active-site signature. 634 646 IPR008271 GO:0004672|GO:0006468
Vvi8g0905 809 CDD B_lectin 50 157 IPR001480 -
Vvi8g0905 809 CDD EGF 292 319 - -
Vvi8g0905 809 Gene3D - 28 155 IPR036426 -
Vvi8g0905 809 PIRSF SRK 6 807 IPR024171 GO:0004674
Vvi8g0905 809 Pfam D-mannose binding lectin 83 170 IPR001480 -
Vvi8g0905 809 SMART blect_4 33 157 IPR001480 -
Vvi8g0905 809 Pfam PAN-like domain 343 396 IPR003609 -
Vvi8g0905 809 ProSiteProfiles Bulb-type lectin domain profile. 27 155 IPR001480 -
Vvi8g0905 809 CDD STKc_IRAK 523 796 - -
Vvi8g0905 809 SMART serkin_6 517 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0905 809 FunFam Serine/threonine-protein kinase 33 155 - -
Vvi8g0905 809 SUPERFAMILY Protein kinase-like (PK-like) 500 795 IPR011009 -
Vvi8g0905 809 ProSiteProfiles PAN/Apple domain profile. 338 418 IPR003609 -
Vvi8g0905 809 Pfam Protein kinase domain 520 792 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0905 809 SMART ntp_6 341 416 IPR003609 -
Vvi8g0905 809 ProSiteProfiles EGF-like domain profile. 288 324 IPR000742 -
Vvi8g0905 809 Pfam S-locus glycoprotein domain 257 319 IPR000858 GO:0048544
Vvi8g0905 809 Gene3D Hepatocyte Growth Factor 348 410 - -
Vvi8g0905 809 Gene3D Transferase(Phosphotransferase) domain 1 592 807 - -
Vvi8g0905 809 SUPERFAMILY alpha-D-mannose-specific plant lectins 70 216 IPR036426 -
Vvi8g0905 809 PANTHER OS07G0415500 PROTEIN 13 796 - -
Vvi8g0905 809 ProSitePatterns Protein kinases ATP-binding region signature. 523 546 IPR017441 GO:0005524
Vvi8g0905 809 Gene3D Phosphorylase Kinase; domain 1 487 591 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0905 Vvi-Chr8 15323108 15325537 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0905 493 803 Trihelix Transcription Factor Family AT5G38560 42.089 1.79e-67 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi8g0905 Pkinase 4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0905 - - vvi:100240889 1638.62