Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0904 ATGCCTGACAACCAAGTGACCAACCAAGCACGTCTTCTCGAAGAAAGGACCAAGCATTTTCTGAGAACAGCTCAAGATGATGATTCGGACGACTACATCACCTCTCCAGACAAATCATTCACTTGTGGTTTCTATGGGATGGGGGAAAATGCTTACTGGTTTTCAATATGGTTCACAAATTCAAAGGAAAGAACTGTTGTTTGGATGGCCAATCGAAATAGACCTGTCAATGGCCGGGGCTCCAGAATTTCGCTGCAGAGAGATGGCACCATGATGCTAAGGGATGCTGATGGCTCAACTGTTTGGGAGACTAACACTACCTCTACCGATGTTGATCGAGCAGAGCTTTTGGACACTGGAAACCTTGTTCTCAAGGACCCACGAGGTAAAATTCTGTGGCAAAGCTTTGATTTTCCAACTGATACTCTTCTGCCAAACCAAATCTTTACCACGAGCACAAAGCTGATCTCTATACTCAGAAAAGGGGATTTTTCTTCTGGTTACTTTAACTTCCTTTTTGACAATGACAATGTCTTGAGAATGATGTATGATGGGCCTGAGATTTCAAGCTTGTATTGGCCTAATCCTGATTGGGATGTTTTCCAAAATGGAAGAACAAACTATAACAGTAGCAGAATTGCTGTTTTAGATGAAATGGGGAGGTTTCTTTCGAGTGATAGAATGTCTTTCAAAGCTTCTGACATGGGTTTTGGAGTCAAAAGGAGGCTGACAATGGACTACGATGGAAACCTGAGACTCTATAGCTTAAACCATTCCACGGGATTATGGAATATATCATGGGAAGCTCTTAGGCAACAGTGTAAAGTGCATGGGCTATGTGGTAGAAATGGGATTTGTATTTATACACCAGAACCCAAGTGTTCATGTCCTCCGGGCTATGAAGTAACTGACCCAAGTGACTGGAGCAAAGGTTGCAAGTCTAAGTTCAACCAAAGCTGTTCCCAAACACAGCAGGTAAAATTTGTGGAGCTTCCCCAGACCGATTACTATGGGTTTGATCTCAATTACAGCCAATCTGTTTCAATGGAAGCTTGCAGGAAAATCTGCTTGGACGATTGCCTTTGCCAAGGATTCGTCTACAGGCTAACAGGAGAAGGGAACTGTTTCGCGAAAAGTACCCTCTTCAATGGCTTCAAGTCCTCCAACTTCCCTGGGAGTTTATATTTAAAACTGCCTGTGGATGTCGAAACGTCAGCACCCACTGTCCTTAATGGTTCTGATCTCATATGCGAGTCCAAGGAGGTTGAGGTTGTGCACAGTTCTTCTGTGTATGACACTGCCAGTAAAAAGATGAGATGGGTTTATCTCTACTCATTTGCTTCTGCCATTGGTGCCATAGAAGTTCTCTTTATTGTGTCAGGTTGGTGGTTTCTTTTCAGGGTACATAATGTGCCATCTTCAGCTGAAGATGGATATGGTCCGATATCAAGCCCGTTCAGGAGATTTAGCTACACCGAACTCAAGAAGGCAACCAACAATTTCAAAGTGGAGCTTGGAAGAGGAGGCTTTGGGGCTGTTTATAAGGGTGTTTTGGAGGATGAAAGGGCAGTAGCAGTGAAGAAATTGGGAGATGCCACTCAAGGGGAAGGGGAGTTTTGGGCTGAAGTAAGCACAATCGGAAAAATCTATCACATGAACCTAGTCAGAATGTGGGGATTCTGTTCAGAGGGTAGACACAGACTTGTAGTCTACGAGCATGTAGAAAATCTGTCACTGGATAAGCATCTCTTCAGCACGAGTTGTCTGGGATGGAAAGAGAGGTTTAACGTTGCAGTGGGGACAGCGAGGGGTTTAGCCTACCTTCACCATGAGTGTCTAGAATGGGTTATCCACTGTGACGTGAAGCCTGAAAATATACTTCTAGACAACGGGTTTGAACCAAAGATTGCAGATTTTGGGCTAGCCAAGCTGTCTCAGAGAGGTGGCCCCGGTTCAGGAGAATTCTCTCGGATTCGGGGGACTAAAGGGTACATGGCTCCAGAGTGGGCTATGAATCTTCCAATTACGGCAAAAGTTGATGTTTATAGCTATGGAGTTGTGGTTTTAGAGATGGTGAGGGGAATTCGGCTTTCGAAATGGGTGGGTGAGGATGGCGAGGAGCAGGAAGCTGAGCTGACGAGGTTTGTCAGGGCAGTGAAAAGGAAAATTCAATATGGCGAAGACAATTGGGTAGAGGATACAGTGGACCCAAGATTGAAGGGGAAGTTTAGCAGGCAGCAGGCTGCCATGTTGGTCGAAATAGGTATTTCTTGTGTGGAGGAAGATAGAAGTAAACGACCAACAATGGCCACCGTAGTGCAAGTTCTACTGGAATGTGAAGATGAAGCCCAAGTCCAAACCCTGGACTTGGAGTAA 2376 0.4495 MPDNQVTNQARLLEERTKHFLRTAQDDDSDDYITSPDKSFTCGFYGMGENAYWFSIWFTNSKERTVVWMANRNRPVNGRGSRISLQRDGTMMLRDADGSTVWETNTTSTDVDRAELLDTGNLVLKDPRGKILWQSFDFPTDTLLPNQIFTTSTKLISILRKGDFSSGYFNFLFDNDNVLRMMYDGPEISSLYWPNPDWDVFQNGRTNYNSSRIAVLDEMGRFLSSDRMSFKASDMGFGVKRRLTMDYDGNLRLYSLNHSTGLWNISWEALRQQCKVHGLCGRNGICIYTPEPKCSCPPGYEVTDPSDWSKGCKSKFNQSCSQTQQVKFVELPQTDYYGFDLNYSQSVSMEACRKICLDDCLCQGFVYRLTGEGNCFAKSTLFNGFKSSNFPGSLYLKLPVDVETSAPTVLNGSDLICESKEVEVVHSSSVYDTASKKMRWVYLYSFASAIGAIEVLFIVSGWWFLFRVHNVPSSAEDGYGPISSPFRRFSYTELKKATNNFKVELGRGGFGAVYKGVLEDERAVAVKKLGDATQGEGEFWAEVSTIGKIYHMNLVRMWGFCSEGRHRLVVYEHVENLSLDKHLFSTSCLGWKERFNVAVGTARGLAYLHHECLEWVIHCDVKPENILLDNGFEPKIADFGLAKLSQRGGPGSGEFSRIRGTKGYMAPEWAMNLPITAKVDVYSYGVVVLEMVRGIRLSKWVGEDGEEQEAELTRFVRAVKRKIQYGEDNWVEDTVDPRLKGKFSRQQAAMLVEIGISCVEEDRSKRPTMATVVQVLLECEDEAQVQTLDLE* 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0904 791 FunFam Serine/threonine-protein kinase 574 784 - -
Vvi8g0904 791 FunFam Serine/threonine-protein kinase 16 137 - -
Vvi8g0904 791 Gene3D Hepatocyte Growth Factor 330 392 - -
Vvi8g0904 791 FunFam Serine/threonine-protein kinase 140 267 - -
Vvi8g0904 791 Pfam PAN-like domain 324 378 IPR003609 -
Vvi8g0904 791 Gene3D - 15 138 IPR036426 -
Vvi8g0904 791 CDD STKc_IRAK 505 778 - -
Vvi8g0904 791 ProSiteProfiles Bulb-type lectin domain profile. 18 137 IPR001480 -
Vvi8g0904 791 PANTHER OS07G0415500 PROTEIN 33 778 - -
Vvi8g0904 791 FunFam S-receptor-like serine/threonine-protein kinase 469 573 - -
Vvi8g0904 791 Gene3D Transferase(Phosphotransferase) domain 1 574 789 - -
Vvi8g0904 791 Pfam D-mannose binding lectin 65 152 IPR001480 -
Vvi8g0904 791 Pfam Protein kinase domain 502 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0904 791 ProSiteProfiles Protein kinase domain profile. 499 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0904 791 SUPERFAMILY alpha-D-mannose-specific plant lectins 52 198 IPR036426 -
Vvi8g0904 791 CDD B_lectin 29 139 IPR001480 -
Vvi8g0904 791 ProSitePatterns Serine/Threonine protein kinases active-site signature. 616 628 IPR008271 GO:0004672|GO:0006468
Vvi8g0904 791 ProSiteProfiles EGF-like domain profile. 270 306 IPR000742 -
Vvi8g0904 791 SUPERFAMILY Protein kinase-like (PK-like) 482 777 IPR011009 -
Vvi8g0904 791 ProSiteProfiles PAN/Apple domain profile. 320 400 IPR003609 -
Vvi8g0904 791 SMART blect_4 18 139 IPR001480 -
Vvi8g0904 791 PIRSF SRK 7 789 IPR024171 GO:0004674
Vvi8g0904 791 CDD PAN_AP_plant 316 399 - -
Vvi8g0904 791 Gene3D Phosphorylase Kinase; domain 1 470 573 - -
Vvi8g0904 791 CDD EGF 274 301 - -
Vvi8g0904 791 ProSitePatterns Protein kinases ATP-binding region signature. 505 528 IPR017441 GO:0005524
Vvi8g0904 791 SMART serkin_6 499 777 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0904 791 Pfam S-locus glycoprotein domain 239 301 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0904 Vvi-Chr8 15310032 15313666 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0904 489 785 Trihelix Transcription Factor Family AT5G38560 42.715 5.12e-66 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi8g0904 Pkinase 2.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0904 - - vvi:100249399 1536.93