Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0901 ATGGGAAACCTTAGTCCTACATCTTCAAAGTTTCCTTCCATTCTTCTTATTCTTCTCATATTTCTCATCTCCTTCTTCTCTGATGCAACTTCCAACACCCAGAACCTTTTGCGAAGAGGCTCCTCTCTCTCTGTCGAAGATGATTCCGACTACATCACCTCCCCAGACAAATCATTCACTTGTGGTTTCTATGGGATGGGGAAAAATGCTTACTGGTTTTCGATATGGCTCACAAATTCAAAGGAAAGAACTGTTGTTTGGATGGCCAATCGAAACAGACCTGTCAATGGCCGGGGCTCCAGAATTTCGATGCAGCGAGATGGCACCATGATTCTAAGGGATGCTGATGGCTCAACTGTTTGGGAGACGAACACTACCTCCAAAGATGTTGATCGAGCAGAGCTTTTGGACACTGGAAACCTTGTTCTGAAGGACCCACGGGGTAAAATTCTATGGCAAAGCTTTGATTTTCCTACTGATACTCTTCTGCCAAACCAAATCCTTACTACAAGCACACAGCTGATCTCTATAATCAGAAGAGGGGATTTTTCCTCTGGTCACTTTTACTTCTTTTTTGATAATGACAATGTCTTGAGAATGATGTATAATGGGCCTGACATTTCAAGCTTGTATTGGCCTAATCCTGATTGGAATGTTTTCGGAAATGGAAGAACAAACTATAACAGTAGCAGAATTGCTGTTTTAGATGAAATGGGGAGGTTTCTTTCGAGTGATAAAATGTCTTTCAAAGCTTCTGACATGGGTTTTGGAGTCAAAAGGAGGCTGACAATGGACTACGATGGAAACCTGAGGCTCTATAGTTTAAACCATTCCACGGGATTATGGGTGATCTCATGGAAAGCTCTTAGCGAACAGTGTAAAGTGCATGGGTTATGTGGTAGAAATGGGATTTGTATTTATACACCAGAACCCAAGTGTTCATGTCCTCCGGGCTATGAAGTAAGTGACCCAAGTGACTGGAGCAAAGGTTGCAAGTCTAAGTTCAACCAAAGCTGTTCCCAAACACAGCACGTAAAATTTGTGGAGCTTCCCCAGACCGATTACTATGGGTTTGATCTCAATTACAGCCAATCTGTTTCAATGGAAGCTTGCAGGAAAATCTGCTTGGACGATTGCCTTTGCCAAGGATTCGCCTACAGGCTAACAGGAGAAGGGAACTGTTACGCAAAAAGTACCCTTTTCAATGGCTACAAGTCCTCGAACTTCCCAGGGAGTTTATATTTAAAACTGCCTATGGATGTCGAAACGTCAGCACCCACTATTCTTAATGGCGCTGATCCCATATGCGAGTCCAAGGAAGTTGAGGTCGTGCTGAGTTCTTCTATGTATGACCCTGCCAATAAAAGGATGAGATGGGTTTATCTCTACTCATTTGCTTCTGCCATTGGTGCAATGGAAATTCTCTTTATTGTGTCGAGTTGGTGGTTTCTTTTCAGGGTACATAATGTGACATCTTCAGTTGAAGATGGATATGGTCCGATTTCAAGTCAGTTCAGGAGATTTAGCTACACCGAACTCAAGAAGGCAACCAACAATTTCAAAGTAGAGCTTGGAAGGGGAGGCTTTGGGGCTGTTTATAAGGGTGTTTTGGAGGATGAAAGGGTAGTAGCTGTGAAGAAATTGGGAGATGTCATTCAAGGGGAAGAGGAGTTTTGGGCTGAAATAATCACAATCCAAAAAATTTATCATATGAATCTTGTCAGAATGTGGGGATTCTGTACAGAGGGTAGACACAGACTTGTAGTCTATGAGCATGTAGAAAATCTATCACTGGATAAGCATCTCTTCAGTACGACTTTTCTGGGATGGAACGAGAGGTTTAACGTTGCAGTGGGGACAGCAAGGGGTTTAGCCTACCTTCACCATGGGTGTCTAGAATGGGTTATCCATTGTGACGTGAAGCCTGAAAATATACTTCTAGACAATGGCTATGGAGTTGTGGTTCTAGAGATGGTGAGGGGAATTCGGCTTTCAAATTGGGTGGTTGGGGATGGTGAGGAGCAGGAAGCTGAGATGACGAGGTTTGTCAGGCTAGTGAAACGGAAAATTGAATGTGGAGAAGACAATTGGGTAGAGGATACAGTGGACCCAAGATTGAAGGGTAAGTTTAGCAGGCACCAGGCAGCAAAGTTGATCGAAATAGGTATTTCTTGTGTAGAGGAAGATGGAAGTAAAAGACCTACAATGGCCACCGTAGTCCAAGTTCTCCTGGAATGTGAAAATGAAGCCCAAGTCCAAACCCTGGACTGGGATTAA 2277 0.4335 MGNLSPTSSKFPSILLILLIFLISFFSDATSNTQNLLRRGSSLSVEDDSDYITSPDKSFTCGFYGMGKNAYWFSIWLTNSKERTVVWMANRNRPVNGRGSRISMQRDGTMILRDADGSTVWETNTTSKDVDRAELLDTGNLVLKDPRGKILWQSFDFPTDTLLPNQILTTSTQLISIIRRGDFSSGHFYFFFDNDNVLRMMYNGPDISSLYWPNPDWNVFGNGRTNYNSSRIAVLDEMGRFLSSDKMSFKASDMGFGVKRRLTMDYDGNLRLYSLNHSTGLWVISWKALSEQCKVHGLCGRNGICIYTPEPKCSCPPGYEVSDPSDWSKGCKSKFNQSCSQTQHVKFVELPQTDYYGFDLNYSQSVSMEACRKICLDDCLCQGFAYRLTGEGNCYAKSTLFNGYKSSNFPGSLYLKLPMDVETSAPTILNGADPICESKEVEVVLSSSMYDPANKRMRWVYLYSFASAIGAMEILFIVSSWWFLFRVHNVTSSVEDGYGPISSQFRRFSYTELKKATNNFKVELGRGGFGAVYKGVLEDERVVAVKKLGDVIQGEEEFWAEIITIQKIYHMNLVRMWGFCTEGRHRLVVYEHVENLSLDKHLFSTTFLGWNERFNVAVGTARGLAYLHHGCLEWVIHCDVKPENILLDNGYGVVVLEMVRGIRLSNWVVGDGEEQEAEMTRFVRLVKRKIECGEDNWVEDTVDPRLKGKFSRHQAAKLIEIGISCVEEDGSKRPTMATVVQVLLECENEAQVQTLDWD* 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0901 758 SMART ntp_6 342 417 IPR003609 -
Vvi8g0901 758 CDD EGF 293 320 - -
Vvi8g0901 758 Gene3D Transferase(Phosphotransferase) domain 1 651 756 - -
Vvi8g0901 758 Gene3D Transferase(Phosphotransferase) domain 1 593 650 - -
Vvi8g0901 758 ProSiteProfiles Bulb-type lectin domain profile. 28 156 IPR001480 -
Vvi8g0901 758 PANTHER OS07G0415500 PROTEIN 13 649 - -
Vvi8g0901 758 ProSiteProfiles EGF-like domain profile. 289 325 IPR000742 -
Vvi8g0901 758 Pfam Protein kinase domain 521 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0901 758 SUPERFAMILY alpha-D-mannose-specific plant lectins 71 218 IPR036426 -
Vvi8g0901 758 Gene3D Hepatocyte Growth Factor 349 411 - -
Vvi8g0901 758 ProSitePatterns Serine/Threonine protein kinases active-site signature. 635 647 IPR008271 GO:0004672|GO:0006468
Vvi8g0901 758 Pfam S-locus glycoprotein domain 258 320 IPR000858 GO:0048544
Vvi8g0901 758 FunFam S-receptor-like serine/threonine-protein kinase 488 592 - -
Vvi8g0901 758 Gene3D Phosphorylase Kinase; domain 1 487 592 - -
Vvi8g0901 758 CDD B_lectin 51 158 IPR001480 -
Vvi8g0901 758 ProSiteProfiles Protein kinase domain profile. 518 758 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0901 758 Pfam PAN-like domain 344 396 IPR003609 -
Vvi8g0901 758 FunFam Serine/threonine-protein kinase 34 156 - -
Vvi8g0901 758 FunFam Serine/threonine-protein kinase 159 286 - -
Vvi8g0901 758 Gene3D - 29 156 IPR036426 -
Vvi8g0901 758 SUPERFAMILY Protein kinase-like (PK-like) 501 743 IPR011009 -
Vvi8g0901 758 PIRSF SRK 7 651 IPR024171 GO:0004674
Vvi8g0901 758 PIRSF SRK 650 755 IPR024171 GO:0004674
Vvi8g0901 758 CDD PAN_AP_plant 335 418 - -
Vvi8g0901 758 ProSitePatterns Protein kinases ATP-binding region signature. 524 547 IPR017441 GO:0005524
Vvi8g0901 758 FunFam Serine/threonine-protein kinase 347 426 - -
Vvi8g0901 758 SMART blect_4 34 158 IPR001480 -
Vvi8g0901 758 ProSiteProfiles PAN/Apple domain profile. 339 418 IPR003609 -
Vvi8g0901 758 Pfam D-mannose binding lectin 84 171 IPR001480 -
Vvi8g0901 758 SMART serkin_6 518 744 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0901 Vvi-Chr8 15293302 15295734 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0901 499 752 Trihelix Transcription Factor Family AT5G38560 34.405 1.12e-41 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vvi8g0901 Pkinase 9.9e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0901 - - vri:117919909 1476.46