Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0898 ATGGCTCAGACCCCGAGCAGAGGGCGAGTGGTTGGGGACTATCTGGTGGGTCGGCAGATAGGGTCAGGATCGTTCTCGGTGGTGTGGCATGCAAGGCACCGAGTTCATGGAACCGAGGTGGCGATTAAGGAGATCGTGACGGGTCGGTTGAACAAGAAATTGCAGGAAAGTCTGATGTCGGAGATCTTTATTTTGAAGAAGATCAATCATCCAAATATTATTCGTTTACATGATATAATTGAGGTTCCTGGAAAGATACACCTTGTTTTGGAATACTGCCGAGGGGGTGATCTTTCCATGTATATTCAAAGCTATGTAAGAGTTCCAGAAGCAACTGCAAAGCACTTCATGCAGCAGCTAGCGGCTGGTTTACAAGTTCTTCGTGATAATAATCTTATACATCGAGATCTAAAGCCACAGAATCTTCTTCTCTCCACAAATGACAACAATTCAGTCCTGAAGATTGCTGATTTTGGATTTGCAAGATCTCTACAACCTAGAGGTCTTGCAGAAACATTGTGTGGTTCACCACTGTACATGGCGCCAGAGATAATGCAACTTCAGAAATATGACGCAAAGGCAGATCTCTGGAGTGTTGGTGCCATTCTCTTTCAACTTGTGACTGGAAGAACACCATTTACAGGCAACAATCAGATACAGTTGCTCCAAAACATTGTTAAATCTAGTGAATTGCATTTCCCTCCTGATAATAATGATTTGAGTGCTGACTGCAAAGATTTGTGTCAGAAATTGCTGCGCCGCAATCCAGTGGAACGACTAACATTTGAAGAGTTTTTTAACCACCCATTCCTTTCTCGAAAGCAACCAGATGAAGCGTTAAGTAGTAGGAGATCATCAAGAATAATTGATGGGTTTCCTTTGTCTGAATGCAATCCTGTGAGAAACACAGAGGAAAGTTCTCAAGAGGATTGTATGCCTTTCCCTCTAGATGATGATTCTAGTGGTCCTGAAGGGAGCCCATCATTTTTGAGGAGGAGGTCCTCAATGAAGTCTACCTATGGATTTTCTCTTGATAAAAAAGTTGATAGAAGGGAAACAATATTTAACACTCCCAACAACATGGATCTTGCTTCTAAATACAGCAGTGCATCACATAAACCAGAAATTACTGGCTTTAGGATTGACAGTCTTAGGCCTTCAGATGAGAATGTCAAAGAACCTCTAAAATCCATGGAACAAAGACCAATGAGAAGTTGTTCAAGAGTTGTGGATTCATTGGAGGAGTTGGTTGATCAAGATTATGTTTTTGTATCTGGACCCCCAATGGATGTGTCATCTTCCTCAGCTATTGCTTCCAAGCCAAGTCATTCACAATGCAGATCAGGGAGTGCCCCTCTAACATCTGTAAATATGAAGACCAAATCAAGTGCACCAATGCCAATTGCTGGTGCTGGAATCACTAATACATTTTATACTGGAAGCTTGGAAAGTCATAGCTCGGCACCTTCTGGGACTTCACAAGGATCCATGGATATAGGAGATGCTTTAGAGCAGCCATCAACTCACTGCATGACAAGGATTAAGTCATTGCAGCAATGTGCATCTGTCATCACTGAATTGGTAAATGAGAAGATTGAGGCTGGTAAGCAACTAGAAGCATTCTCAATCCAGCTTGTAATTCTTGCAATTTGGAAGCAAGCACTGCATATTTGCCATACACAGGCTGCCTCAGCTATGGAGGGAAGTCCAACCCAAGAAACTTCTAGATTAAGGAGGAGCACTGACAAGAAGCATGGGAGTCCTGATATGCGAGAATGTCTTGATATTGTTAACAATCAAGGGCCAGGGGATATTTGCTCCCAGATTGAGAGGGAATTTCTCCATCAAGTTGGGCATGCTGAGGAACTTGCTAAGGTTATTGAGCCTGGAAGTACAGAGATGCCAGATGCAATGGAGATGATATTTCAATCTGCCCTTGCCTTGGGTAGAAATGGGGCTGTTGATGAGCTCATGGGTGATGTGGAAAGCGCAGTGTCCTTGTATTCAAAGGCAGTGCACTTGTTAGTGTTCCTTCTAGTGGAAGCACCGTCCCTCATTCTCAACCCTCCCTTCTCTCTTACAAACTCAGACCGGTATAGGCTTCGAACTTACATTGATATCCTTAATATCAGGCAAGTCCACTCAAGGTCTCAAAGGATGAATCTTCTTAAGTGCGAGGATCAACAATGCCCCCCTTAA 2199 0.432 MAQTPSRGRVVGDYLVGRQIGSGSFSVVWHARHRVHGTEVAIKEIVTGRLNKKLQESLMSEIFILKKINHPNIIRLHDIIEVPGKIHLVLEYCRGGDLSMYIQSYVRVPEATAKHFMQQLAAGLQVLRDNNLIHRDLKPQNLLLSTNDNNSVLKIADFGFARSLQPRGLAETLCGSPLYMAPEIMQLQKYDAKADLWSVGAILFQLVTGRTPFTGNNQIQLLQNIVKSSELHFPPDNNDLSADCKDLCQKLLRRNPVERLTFEEFFNHPFLSRKQPDEALSSRRSSRIIDGFPLSECNPVRNTEESSQEDCMPFPLDDDSSGPEGSPSFLRRRSSMKSTYGFSLDKKVDRRETIFNTPNNMDLASKYSSASHKPEITGFRIDSLRPSDENVKEPLKSMEQRPMRSCSRVVDSLEELVDQDYVFVSGPPMDVSSSSAIASKPSHSQCRSGSAPLTSVNMKTKSSAPMPIAGAGITNTFYTGSLESHSSAPSGTSQGSMDIGDALEQPSTHCMTRIKSLQQCASVITELVNEKIEAGKQLEAFSIQLVILAIWKQALHICHTQAASAMEGSPTQETSRLRRSTDKKHGSPDMRECLDIVNNQGPGDICSQIEREFLHQVGHAEELAKVIEPGSTEMPDAMEMIFQSALALGRNGAVDELMGDVESAVSLYSKAVHLLVFLLVEAPSLILNPPFSLTNSDRYRLRTYIDILNIRQVHSRSQRMNLLKCEDQQCPP* 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0898 732 FunFam Serine/threonine-protein kinase ATG1 6 310 - -
Vvi8g0898 732 MobiDBLite consensus disorder prediction 563 589 - -
Vvi8g0898 732 CDD STKc_ATG1_ULK_like 20 270 - -
Vvi8g0898 732 MobiDBLite consensus disorder prediction 434 458 - -
Vvi8g0898 732 Pfam Protein kinase domain 16 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0898 732 ProSiteProfiles Protein kinase domain profile. 14 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0898 732 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Vvi8g0898 732 PANTHER SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 7 645 IPR045269 GO:0004674|GO:0006914
Vvi8g0898 732 Gene3D Transferase(Phosphotransferase) domain 1 6 311 - -
Vvi8g0898 732 FunFam Non-specific serine/threonine protein kinase 1 94 - -
Vvi8g0898 732 SUPERFAMILY Protein kinase-like (PK-like) 10 272 IPR011009 -
Vvi8g0898 732 SMART serkin_6 14 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0898 732 MobiDBLite consensus disorder prediction 298 332 - -
Vvi8g0898 732 ProSitePatterns Protein kinases ATP-binding region signature. 20 43 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0898 Vvi-Chr8 15252860 15261873 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0898 10 273 CBL-interacting serine-threonine protein kinases AT2G30360 37.037 6.63e-53 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-3 Vvi8g0898 Pkinase 2.3e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0898 K08269 - vvi:100251048 1446.03