Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0881 ATGGTGATCGACGCAGCACCGCAACCCAACAAGGTCCGATGGGGAGAGCTGGAGGAGGACGACACCGAGGACCTCGATTTCCTCCTCCCTCCTCCCCAAGTAATTGGTCCCGACGACAACGGCATCAAAAAGGTTATCGAGTACAAGTTCAACGACGATGGTGACAAGGTCAAGATCACCACCACAACTCGGGTCCGCAAACTCGCCAATGCTCGACTCAGTAAGCGAGCCGTGGAGCGCCGTTCATGGCCTAAATTCGGTGACGCCATCCACGAAGATGTGGGAAGCAGACTCACCATGGTTTCCACTGAAGAGATTTTGATCGAGAGGCCTAGGGCTCATGGTAGCAAAGCAGAGGAAACCAATACTGTGGGAGGAGATTCCCTGGCACAGCTTACAAAAGGAGGTGCTGTACTCATGGTGTGCAGGACTTGTGGGAAGAAGGGTGATCACTGGACATCCAGGTGTCCTTATAAGGATCTTGCACCACAACCTGAAGCCTTCATTGACAAACCTACTGCATCAGATCCCACTGCTGCGGCTTCTGTAACAAAGGGTGCATATGTTCCACCAAGCATGAGAGCTGGTGCTGATAGAAGCAGTGGTACAGATATGAGGCGCAGGAATGAAGAGAATGCTGTCCGGGTCAGCAATCTCTCAGAGGATACTCATGAGGCTGACTTGCGTGAGCTATTTAGCCGTTTTGGGCAACTAACCCGTGTTTATGTTGCCATTGACCACAAGACTGGTTTGAGCAGAGGTTTTGGGTATGTCAATTTTGTCAACAGGGAAGATGCTGAGAGAGCTATTAGTAAGCTCAATGGATATGGTTATGACAGTCTCATCCTGCAAGTTGAGTGGTCCACACCAAGACCGAACTAG 882 0.5079 MVIDAAPQPNKVRWGELEEDDTEDLDFLLPPPQVIGPDDNGIKKVIEYKFNDDGDKVKITTTTRVRKLANARLSKRAVERRSWPKFGDAIHEDVGSRLTMVSTEEILIERPRAHGSKAEETNTVGGDSLAQLTKGGAVLMVCRTCGKKGDHWTSRCPYKDLAPQPEAFIDKPTASDPTAAASVTKGAYVPPSMRAGADRSSGTDMRRRNEENAVRVSNLSEDTHEADLRELFSRFGQLTRVYVAIDHKTGLSRGFGYVNFVNREDAERAISKLNGYGYDSLILQVEWSTPRPN* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0881 293 Pfam Eukaryotic translation initiation factor 3 subunit G 33 161 IPR024675 -
Vvi8g0881 293 FunFam Eukaryotic translation initiation factor 3 subunit G 176 293 - -
Vvi8g0881 293 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 290 IPR000504 GO:0003723
Vvi8g0881 293 SMART rrm1_1 213 286 IPR000504 GO:0003723
Vvi8g0881 293 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 11 292 IPR017334 GO:0003743|GO:0005737|GO:0005852
Vvi8g0881 293 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 22 289 - -
Vvi8g0881 293 PIRSF Transl_init_eIF-3_RNA-bind 3 293 IPR017334 GO:0003743|GO:0005737|GO:0005852
Vvi8g0881 293 CDD eIF3G 40 160 IPR024675 -
Vvi8g0881 293 MobiDBLite consensus disorder prediction 200 218 - -
Vvi8g0881 293 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 279 IPR000504 GO:0003723
Vvi8g0881 293 MobiDBLite consensus disorder prediction 189 218 - -
Vvi8g0881 293 CDD RRM_eIF3G_like 214 288 IPR034240 -
Vvi8g0881 293 Gene3D - 172 293 IPR012677 -
Vvi8g0881 293 SUPERFAMILY RNA-binding domain, RBD 197 292 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0881 Vvi-Chr8 15114889 15118914 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0881 1 292 Eukaryotic Initiation Factors Gene Family AT3G11400 65.325 4.12e-147 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0881 K03248 - vvi:100242668 574.318