Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0880 ATGGAAAAGAATGTGCTTCCTTTGTTGTTGCATGCACTGGCTCTGCTGCTATGCACCAGGGCTGCAATGTGCGCACCACGCTGCGGAGACTGTGGCCGCATTCCTGTGCCTTACCCCCTCAGCACTGGACCTGGGTGCGGTGACCAGTCCTACAAGGTCCGGTGCAATGCAGGCACGCTGTGGTTTGATGCCCTCAGCCAATCCTCCTATGTTATCACGTCAATCAACCCGGGAACTCGACGGATGATCGTCAAACCAGCAAGCCTCCTTGCAAACACTTGCATCACAACCGATATCCAAGTTGGGGGTCTCCAGCTTGACCGCATCTCACCCTACAACATACCTAGCAGCAACACGATCATGCTGATGAACTGTTCAAATGCAGTGCTGAATTCATCTGTTAATTGCTCGCCAAACAGTATCTGTCATGCCTATATCAGAGAGAATGTGGTGGCGGCTGCGTGTAGGAGTACGGCAAAATGCTGTTGGTTCAAGGCTGGGGGCCCAGTGAACGCGTATAAGATCGGTGTTCGTGATGAGGGGTGCATGGCGTATCAGAGTTTTGTAAATTTGGCCACTTCATTACCAGTGAAGAGGTGGCCAGAGCCCGGGCTGGAGATAGAGTGGGCGTTACCACAAGAGCCAATTTGCAAAATCCCAAAAGATTGCTCGACCTTGTTGAATTCTATGTGTTTGCCAGATGGGGCAATCCTTGGACAGAGGAGGTGCTTCTGCAAAGCCGGGTTCCATTGGGGCCCCATCAATGGATTGTGTCAAAATTTGAAGTGTGAAAAAGCAAAATCTTGCAAGCACAAAAAGAAGTCACGGACCCCACTCCTTGGAGGTGTGGCAGTGGTGGCTGCAATCCTAATCCTGGTCCCAGTTGGAATTCTAGTCTGCAGGCATCGTCAGAACCTTAAGAGAGAAGCCCAGGGGAGCTTAATAAAAAAGCGAGAAGACATGTTAAATGCCAACAACAGTGGTAAAATGGCCAAGATCTTCAGTGGCAAGGAAATAAAAAGGGCAACAAACAACTTCTCCAAAGACAATTTCATAGGCTCTGGTGGCTTCAGTGAGGTCTTCAAGGGCATCCTTGACGACGGGACAGTGACCGCCGTCAAGCGCGCCAAGCTCGGAAACACCAAAGGCACTGATCAAGTTCTGAACGAGGTTCGAATTCTTTGCCAAGTGAACCATCGGTGCCTGGTTCGTCTTCTTGGCTGTTGTGTGGAGCTTGAACAACCTATCATGATATACGAGTACATCCCCAACGGCACCCTCTTTGACCATCTCCATGGGCACCATTCCAGAAAGTGGCCTGCACTCACCTGGCGCCGCCGCCTCTCTATTGCCCTCCAGACTGCTGAAGGCCTTGCTTATCTCCACTCGTCTGCCGTGCCACCCATTTACCATCGGGACGTTAAATCAAGTAACATTTTATTAGATGAAAAGCTTGACGCCAAGGTTTCTGACTTTGGGCTGTCGAGGCTGGCAGTTGTTTCAGAGGCGAATGCGAGTCATATCACTACATGTGCGCAAGGAACCTTAGGTTATCTTGACCCTGAATATTATCGCAACTTTCAACTTACTGACAAGAGTGATGTTTATAGCTTTGGGGTTGTGTTGTTGGAGCTGTTAACCTCCAAGAAAGCTATTGATTTTAACAGAGAGGAGGAAGATGTGAACCTTGTGCTGTACATTAAAAAGATTATGAAAGAAGAGAAGTTGATGGATGTCATTGATCCGGTGCTTAAAGACGGAGCTAGCAAGGTGGACATGGAGAGTGTGAAGGCATTGGGGTTGCTGGCAGCAGCATGTTTGGACGAGCGAAGGCAGAGTCGGCCTTCAATGAAAGAAGCTGCTGAGGAGATTGAGTACATCATTAGCATTATTGAGGTTCCAAAGGATTAA 1911 0.4908 MEKNVLPLLLHALALLLCTRAAMCAPRCGDCGRIPVPYPLSTGPGCGDQSYKVRCNAGTLWFDALSQSSYVITSINPGTRRMIVKPASLLANTCITTDIQVGGLQLDRISPYNIPSSNTIMLMNCSNAVLNSSVNCSPNSICHAYIRENVVAAACRSTAKCCWFKAGGPVNAYKIGVRDEGCMAYQSFVNLATSLPVKRWPEPGLEIEWALPQEPICKIPKDCSTLLNSMCLPDGAILGQRRCFCKAGFHWGPINGLCQNLKCEKAKSCKHKKKSRTPLLGGVAVVAAILILVPVGILVCRHRQNLKREAQGSLIKKREDMLNANNSGKMAKIFSGKEIKRATNNFSKDNFIGSGGFSEVFKGILDDGTVTAVKRAKLGNTKGTDQVLNEVRILCQVNHRCLVRLLGCCVELEQPIMIYEYIPNGTLFDHLHGHHSRKWPALTWRRRLSIALQTAEGLAYLHSSAVPPIYHRDVKSSNILLDEKLDAKVSDFGLSRLAVVSEANASHITTCAQGTLGYLDPEYYRNFQLTDKSDVYSFGVVLLELLTSKKAIDFNREEEDVNLVLYIKKIMKEEKLMDVIDPVLKDGASKVDMESVKALGLLAAACLDERRQSRPSMKEAAEEIEYIISIIEVPKD* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0880 636 Pfam Wall-associated receptor kinase galacturonan-binding 24 84 IPR025287 GO:0030247
Vvi8g0880 636 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 24 627 IPR045274 GO:0007166
Vvi8g0880 636 SUPERFAMILY Protein kinase-like (PK-like) 325 624 IPR011009 -
Vvi8g0880 636 ProSitePatterns Serine/Threonine protein kinases active-site signature. 469 481 IPR008271 GO:0004672|GO:0006468
Vvi8g0880 636 SMART serkin_6 346 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0880 636 ProSitePatterns Protein kinases ATP-binding region signature. 352 374 IPR017441 GO:0005524
Vvi8g0880 636 ProSiteProfiles Protein kinase domain profile. 346 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0880 636 FunFam Wall-associated receptor kinase-like 20 308 421 - -
Vvi8g0880 636 CDD STKc_IRAK 352 619 - -
Vvi8g0880 636 Gene3D Phosphorylase Kinase; domain 1 308 421 - -
Vvi8g0880 636 Pfam Protein kinase domain 347 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0880 636 FunFam Wall-associated receptor kinase-like 20 422 636 - -
Vvi8g0880 636 Gene3D Transferase(Phosphotransferase) domain 1 422 632 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0880 Vvi-Chr8 15111231 15113604 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0880 26 631 Receptor kinase-like Gene Family AT5G02070 60.813 0.0 758
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vvi8g0880 Pkinase 9.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0880 - - vvi:100256173 1236.48