Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0878 ATGGAGACTAGTGCTTTAAGGCAGTTGCTTAAGAGCTTTTGCAACAATTCACATTGGAAATATGCAGTCTTTTGGAGACTTAAGCACCAGAACCCAATGCTTTTGACATGGGAAGATGGGTATTGTGATTATCCAAATCCAAGAGAACCTGTGGAAAGCATATCAGATGATATTTACTTGAACAATGCAAATGATATATCTTCTTTAAACTGTGAAATAGATGGATTCAATGGAAGTTATGGATATCCAGTGGAATTAGCAGTGGCTAATATGTCATGTCTTCAGTATGCATTTGGAGAGGGGGTTGTTGGTGAAGTGGCAAAAACAGGAAACCACTGCTGGGTCTTCACTGATGATATTTTTGCCAGCAGATTCAACTCTAAGTTAGTCCCTGAGTGTCCAGATGAATGGCTCCTCCAGTTTGTGGCAGGTATTAAGACTGTACTGCTGGTGCCTGTTATTCCACATGGGGTTTTGCAACTTGGATCATTGGAGAAGGTTGCTGAAAATGTGGCTGTTGTTGCTTGTATTAAAGATAGTTTTGACACCCTTCAAAATGAAGTGGGGTTTTCGGTACCTTTCATCTCAAACTGGAATTGCCTACTCCACAAGGTTCTGTATGAAGACTCAGAGGTGGTTGACAGTGTCAAGCCCAAAAATAGCAAATTGTTGAGCACAAATCAAGCTATACCACTTTTCACGGTTCAAGATGCTTTTCAAGCATTTGGAGAAGATCTTCCATTGATTCATGAAAGCGAAAGCAAAAAGGAGATCAGTGTCTTTTCTGTGGGTTTAAATGAAGTATCAACTCTAAAAGGTCAGTGTATAAATAATAGTCAATGGGGGGTAATAGAGAGTAACCTATCCAGATTTTCTTGTCTGGAAGAAGAATTACATGCTGTTTCTCAGTATAACAACTACAATTTGGAGGTTCTTGAAGAATCTTCTGAAGGAATTATGAATTCTTACTGTGCTGGAGGTTTGATTGAGCCGTCAGTTGGAGACAAGGATGCTAATGATACAGGCCATAGAAGTACAGACAGTTTCTTCAGTTTTCCCTTAGACTGTGAACTGCACAAAGCACTTGGATTGGCTATGCAGAGACAAACTAGTGACTATATTCGGGGATCATCTGAGGATGCATCTAGCACTGCAAAACCAATTTGCAATAGAGATATTGTTGATGTTATTGAGCCATTGACCCAGGAATCCAGTGGATATTTTGCCAAAGGAGGCGATGCAGTGAATCTCTTGGAAGATGTAGTTGCCAACATACATAGTGGCTCAGATGATACGTCATCTCATAGATCCAATAGTGTTAAGTCATCTACAACCTTGTCAGGACAATTTTCTACCTCCTCCCATGTGGGTAATCAATCAGAAGGAAGTGCCTTGGTGCAAGATGATTCACTTCTGTGGAGCCATGTGAAACCTGAATTTGTTGCTAGCAGAGGAAATGCTTTTACTAATTCCTCAATTTCGTCGTCTTCATTTAAGAGCACAATGACCACATTGGCTGATGAAGAGCAGCAGAAAAAGGGGTATGGTTGCTTGCAGCCAAGGAAGGGCTCAAAGTTGTCTAATGCGAACAAAAAAAGGGCTAGTCCTGGTAATAACCAGAGGCCTAGACCGAGGGATAGACAGATGATTCAGGATCGAGTCAAGGAGCTGCGGGAACTTGTCCCAAATGGTGCCAAGTGCAGCATAGATGGCCTGTTAGATCGAACCATAAAGCACATGTTGTTTTTAAGAAACAGCACTGATCAGGCTGCAAAATTGAAGCAAAGGGTGCATCAAGAGGTATGTATAGGTGAATGGCAGAGTCAAATTTATGTACCTAGATAG 1845 0.4119 METSALRQLLKSFCNNSHWKYAVFWRLKHQNPMLLTWEDGYCDYPNPREPVESISDDIYLNNANDISSLNCEIDGFNGSYGYPVELAVANMSCLQYAFGEGVVGEVAKTGNHCWVFTDDIFASRFNSKLVPECPDEWLLQFVAGIKTVLLVPVIPHGVLQLGSLEKVAENVAVVACIKDSFDTLQNEVGFSVPFISNWNCLLHKVLYEDSEVVDSVKPKNSKLLSTNQAIPLFTVQDAFQAFGEDLPLIHESESKKEISVFSVGLNEVSTLKGQCINNSQWGVIESNLSRFSCLEEELHAVSQYNNYNLEVLEESSEGIMNSYCAGGLIEPSVGDKDANDTGHRSTDSFFSFPLDCELHKALGLAMQRQTSDYIRGSSEDASSTAKPICNRDIVDVIEPLTQESSGYFAKGGDAVNLLEDVVANIHSGSDDTSSHRSNSVKSSTTLSGQFSTSSHVGNQSEGSALVQDDSLLWSHVKPEFVASRGNAFTNSSISSSSFKSTMTTLADEEQQKKGYGCLQPRKGSKLSNANKKRASPGNNQRPRPRDRQMIQDRVKELRELVPNGAKCSIDGLLDRTIKHMLFLRNSTDQAAKLKQRVHQEVCIGEWQSQIYVPR* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0878 614 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 6 181 IPR025610 -
Vvi8g0878 614 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 534 583 IPR011598 GO:0046983
Vvi8g0878 614 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 4 602 IPR043561 GO:0003700|GO:0006355
Vvi8g0878 614 MobiDBLite consensus disorder prediction 427 462 - -
Vvi8g0878 614 MobiDBLite consensus disorder prediction 509 548 - -
Vvi8g0878 614 MobiDBLite consensus disorder prediction 523 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0878 Vvi-Chr8 15089311 15093400 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0878 357 595 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 36.842 1.27e-29 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0878 - - vvi:100249509 1206.82