Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0872 ATGGAGCAGGCACGATTCTGGATGTGGACAAAGCGGAAACATAGTTTGAGTTCTCATGTTCAAGCATCCACTAATCCTTCATACAGTGATTCGTGGGAAGAACAGGCTTTTGCAGAAGATGCAGCTGGGCCTCTTGGAGGGTGTATTTGGCCTCCAAGGTCCTATTCTTGCAGCTTTTGTAAAAGAGAATTCAGGTCAGCTCAAGCTCTAGGTGGTCATATGAATGTTCATAGGAGGGATAGAGCCAGACTAAAGCAGTCTCCAAGTCCCCACAATGAAATTCTTCACCATCACCATCAAAATCACCACAATCATACTCAGCATCCCTGTTCATCTTTGGGTTTTCAATACCCATCTCAGATCTTGGTCCCTCCTTATTCTTCCTCTATCATCCAAGAGCACAAAAAGAGGCCTCCTTTTTCTCCCGCACCATCAAATCCAAACTCGGGTGCGGATGGATATATTTGCGTGTCGGATCCAAAAGCTGAAGGAGAAAAGAGCTCTAGAATTCTAGAATCAGGATGTTGGGCTAAAGGGGACTATATCAAACCTGATTTATCTGTAAGCTTGAATTGGGTGGTCCGAAGAACTCGTCAAACTGCGTCATCAGGTGGCATGGAGGAGACCATTAGTTGCAAGAGAAGGAGAACGGATTCACCATCATTATTACCTTTCTTCCTTAAACCAAGTTCAGGTGATAGACATCACGTCCAACCAGAGGTACTTGAACTTCGCGCAAGCTCCTTAGAAGACTTGGATCTCGAGCTCAGGCTTGGTGAACGGCCAAAGGTGAAGTAG 798 0.4549 MEQARFWMWTKRKHSLSSHVQASTNPSYSDSWEEQAFAEDAAGPLGGCIWPPRSYSCSFCKREFRSAQALGGHMNVHRRDRARLKQSPSPHNEILHHHHQNHHNHTQHPCSSLGFQYPSQILVPPYSSSIIQEHKKRPPFSPAPSNPNSGADGYICVSDPKAEGEKSSRILESGCWAKGDYIKPDLSVSLNWVVRRTRQTASSGGMEETISCKRRRTDSPSLLPFFLKPSSGDRHHVQPEVLELRASSLEDLDLELRLGERPKVK* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0872 265 ProSitePatterns Zinc finger C2H2 type domain signature. 57 77 IPR013087 -
Vvi8g0872 265 Pfam C2H2-type zinc finger 55 79 - -
Vvi8g0872 265 MobiDBLite consensus disorder prediction 133 156 - -
Vvi8g0872 265 ProSiteProfiles Zinc finger C2H2 type domain profile. 55 82 IPR013087 -
Vvi8g0872 265 SMART c2h2final6 55 77 IPR013087 -
Vvi8g0872 265 Gene3D Classic Zinc Finger 7 77 - -
Vvi8g0872 265 MobiDBLite consensus disorder prediction 84 110 - -
Vvi8g0872 265 SUPERFAMILY beta-beta-alpha zinc fingers 52 81 IPR036236 -
Vvi8g0872 265 PANTHER OS07G0101800 PROTEIN 26 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0872 Vvi-Chr8 15048333 15049244 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0872 31 262 C2H2 Transcription Factor Family AT2G37740 35.764 2.88e-30 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0872 - - vvi:100259726 503.827