Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0871 ATGGAGATTAATCCCCCAAGTGTAGAAAAGTTCGAGCAAATATCATGCAACTTAGATGAGCAGGGTTCAGGGGAGCAAGTTCGGGCTTATACATGTACCTTCTGCAAGAGAGGCTTCTCAAATGCACAAGCCCTAGGAGGTCACATGAATATCCATAGGAAAGACAGGGCCAAGCTCAAACAAACCGAAGATGAAAGCCTACTCTCTGTGGACATGGAAAAGAAGAATCCCTTAATCCATCCTCAGCCATCTGCAGACAACTTATCTCAACTGGGATCAACGGAAGGCAAAGATTGCACACTTAAAAGGCCATTGACCTTGTCTGGAGAAGACGATATCAGTCCTTCAGGGAAAGATGGCATGGAAAAACTGCACCAGCTGTCCTTGTTTTCTGAGAAGCCATCAAAGGGCAATGATCAAAGGGCAAGTTCTGCTGGCGGGCATGAGGAGAAGACAAGGCACAGTCATCATGGTTCATCTCAGAAAGAATTGGACCTGGAGCTTCGTTTAGGGCCAGAACCCCATGAGACATCTGCATCCGGATCCAGAGAGTTCTTTTGA 561 0.467 MEINPPSVEKFEQISCNLDEQGSGEQVRAYTCTFCKRGFSNAQALGGHMNIHRKDRAKLKQTEDESLLSVDMEKKNPLIHPQPSADNLSQLGSTEGKDCTLKRPLTLSGEDDISPSGKDGMEKLHQLSLFSEKPSKGNDQRASSAGGHEEKTRHSHHGSSQKELDLELRLGPEPHETSASGSREFF* 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0871 186 SMART c2h2final6 30 52 IPR013087 -
Vvi8g0871 186 Gene3D Classic Zinc Finger 9 82 - -
Vvi8g0871 186 PANTHER OS07G0101800 PROTEIN 27 174 - -
Vvi8g0871 186 MobiDBLite consensus disorder prediction 143 172 - -
Vvi8g0871 186 MobiDBLite consensus disorder prediction 74 186 - -
Vvi8g0871 186 ProSitePatterns Zinc finger C2H2 type domain signature. 32 52 IPR013087 -
Vvi8g0871 186 ProSiteProfiles Zinc finger C2H2 type domain profile. 30 57 IPR013087 -
Vvi8g0871 186 Pfam C2H2-type zinc finger 29 54 - -
Vvi8g0871 186 SUPERFAMILY beta-beta-alpha zinc fingers 28 56 IPR036236 -
Vvi8g0871 186 MobiDBLite consensus disorder prediction 82 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0871 Vvi-Chr8 15040331 15040891 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0871 23 182 C2H2 Transcription Factor Family AT3G53820 36.310 6.70e-20 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi8g0871 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0871 - - vvi:104880194 381.333