Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0868 ATGAAGGCAACCATTTCCATCCTTCTTTTGGCTCTATTCTTCACCCTTAACCATTCTCAAGCTTCGCTACGCATACCCCATTTCAACAACTCAACAGATCAAGATGTCCTCCTTTCCTTCAAGGCCCAAGTAACCAAGGATCCAAACGGGGTTTTAGATACTTGGAAGCCAAACACATCTTTTTGCAATTGGCATGGAGTCCTCTGCAATCCCATGAAGAACAGAGTTACTGGTCTTACTCTTAGAAACCTTACCCTTGCAGGAACAATTACTTCTTATATCGCCAATCTCTCCTTCCTACGTCGTCTTGACTTGCAAGAGAATAGTTTTCATGGTACCATTCCCATAGACTTTGGCAGGCTTTTTCGCCTAGTTACTCTAATTTTGGCTTCCAACAATATTCATAGAAATATTCCTTCTTCACTTGGGCTTTGCTCTAGGCTTCAGGTCATTGATCTTTCAGATAACCAGCTCCAAGGAACAATTCCATCAGAATTAGGTAATCTACTAGAGCTTCAAGATTTGAGTTTTGCAAAGAATAATCTTTCAGGGAACATCCCTTCCTCTCTTGGCAACTGTTCTTCTCTTAACAACCTCATCTTATTGTCAAATAACCTCCAGGGGACAATTCCCACTGAATTGGCCCATCTCAGTCTTCTTCTACAGCTGAACTTAGGGAACAACAATCTTTCAGGTGAGATTCCGCCATCACTCTTCAACATTTCTTCTTTGCTCATTTTGGGTCTAGCAAAGAATCAGATTTCAGGCCATCTTCCTTCGAATTTATTTACGACATTGCCTAATATAAACACCTTGTTTGTGGGAGGGAATCTGCTTCAAGGACACATCCCTGGATCTCTATCCAATGCTTCAAGCCTTGAAAAGCTTGATCTCTCAACAAACCTATTCACAGGAAAGGTTCCATTGTTATGGAATCTTCCAAACATTCAGATTTTGAATCTTGAAATCAATATGTTAGTCAGTGAAGGGGAACACGGGTTGGATTTTATTACTTCTCTGTCCAATTCTACTTCTCTGAGAGTATTCTCAGTTGCAACCAATAAACTGACTGGTCACCTTCCTTCCTCAATTGGCAACCTCTCAAACCAGCTCGCTTTGTTAGTTATGGGACAAAACCATTTTGAGGGAAACATACCTGAAGGAGTTGGGAACCTGAGGAGTCTTATTCAGTTATCCATGGAAGAAAATGTCTTAACCGGACACATTCCTTCTACAATTGGAAACCTTCAAAACCTACAAAGCTTGATTTTAGACTCCAACTATTTGTCAGGTTCAATACCTGAATCATTGGGAAACCTGACTCAATTGTATGAGCTGGGTTTGAGTGGGAACAATATTACAGGGAGAATTCCTTCAAGCCTTTCAAGTTGTCAACGTCTCCAACTTTTGGATCTGTCAATCAATGGCCTCAGAGACAACATACCCAAAGAAATCTTTAGCTTCCCGAATCTAGCAACAGTTCTAAATCTTTCATGGAACTCTCTAAGTGGGTCTTTGCCTTCTGAAATTGGCACCTTAAAGATGGTACAGGGTATAGACATCTCCAACAACAGGCTTTCAGGAGCAATTCCAACAACAGTTGGGGTCTGTTCAAATCTGTTATACCTGGATCTGTCCAGCAATTCCTTTCAAGGACTAATTCCTGATTCTTTAGAGGAGCTAAGAGGTATAGAATATATTGATCTTTCAACTAATAATTTGTCTGCCTTGATTCCTTCACTTGGTACCCTTAAGTACCTCCAACTATTGAATCTCTCTGCTAATAAGCTTCAAGGGGAGGTACCCAAAGGAGGCATCTTTAGCAACACATCTGCGGTTTTCCTTTCTGGAAATCCAGGGCTCTGCGGTGGCCTTCCGGTGTTGGAACTACCCAATTGCCCTGCCACCGGGAGCCGCTCTAGTAGCTCCAGGACCAGGAAGATGCTGATTGTAGGGCTAACTGCAGGCGCAGCAGCTATGTGCATTCTGATTGTCCTCTTTATGTTTTTAATCATGAAGAGGAAGAAGAAACATGACCCAACGGTCACAGATGTAATTTCTTTTGAGGGTCCTCCCAGATTGTACTCCTACTATGTCCTGAAATCTGCAACAAATAATTTCAGTAGTGAGAACTTGATTGGGGAAGGGAGTTTTGGCTGTGTCTACAGGGGAGTTATGAGAGATGGGACTTTGGCTGCTGTGAAAGTCTTTAACATGGACCAACATGGAGCTTCCAGAAGCTTTCTAGCCGAGTGTGAAGCCCTTAGATATGTTCGGCATCGGAACCTAGTAAAGATCCTGAGTGCTTGCTCATCTCCAACATTCAAGGCTCTGGTGTTGCAATTCATGCCGAACGGAAGCTTGGAGAAGTGGCTTCACCATGGGGGGGAAGATGGAAGACAAAGGCTTAATCTAAAGCAGAGAATGGACATTGTCGTCGAGGTCGCATCTGCAATGGAGTATCTCCATCACAACTGCGAAACCCCAGTGGTGCACTGTGATCTCAAGCCAAGTAATGTCCTCCTGGATCAAGACATGACTGCTCATGTGGGGGACTTCGGACTTGCAAGGATACTTCATGGAGCTGCATCCGATCATCAAATCAGTAGCACTCTCGGCTTAAAAGGATCAATAGGCTATATTGCACCAGAGTACGGTTTGGGGGGCGGTGTGTCCACAAAGGGCGATGTGTATTGTTTTGGAATACTTGTGCTGGAGATGTTTACAGGAAAGAAACCAACCCAGGAGATGTTCAGCGGAGAATTTAGTCTTCGAAGGTGGGTGGAAGCAGCCGTGCCGGATCAAGTGATGGGGATTGTGGACAATGAATTGGAGGGAGATTGTAAAATTTTGGGCGTGGAATATTTGAACTCAGTCATACAGATTGGTCTATCGTGTGCCTCTGAGAAGCCAGAAGATAGACCAGACATGAAAGACGTTAGCGCAATGATGGAGAAAACTAGGGCTGTCCTCTTCACCGCTCCCACCGTAATCTGCAATTCGCAATGTTAA 3012 0.4356 MKATISILLLALFFTLNHSQASLRIPHFNNSTDQDVLLSFKAQVTKDPNGVLDTWKPNTSFCNWHGVLCNPMKNRVTGLTLRNLTLAGTITSYIANLSFLRRLDLQENSFHGTIPIDFGRLFRLVTLILASNNIHRNIPSSLGLCSRLQVIDLSDNQLQGTIPSELGNLLELQDLSFAKNNLSGNIPSSLGNCSSLNNLILLSNNLQGTIPTELAHLSLLLQLNLGNNNLSGEIPPSLFNISSLLILGLAKNQISGHLPSNLFTTLPNINTLFVGGNLLQGHIPGSLSNASSLEKLDLSTNLFTGKVPLLWNLPNIQILNLEINMLVSEGEHGLDFITSLSNSTSLRVFSVATNKLTGHLPSSIGNLSNQLALLVMGQNHFEGNIPEGVGNLRSLIQLSMEENVLTGHIPSTIGNLQNLQSLILDSNYLSGSIPESLGNLTQLYELGLSGNNITGRIPSSLSSCQRLQLLDLSINGLRDNIPKEIFSFPNLATVLNLSWNSLSGSLPSEIGTLKMVQGIDISNNRLSGAIPTTVGVCSNLLYLDLSSNSFQGLIPDSLEELRGIEYIDLSTNNLSALIPSLGTLKYLQLLNLSANKLQGEVPKGGIFSNTSAVFLSGNPGLCGGLPVLELPNCPATGSRSSSSRTRKMLIVGLTAGAAAMCILIVLFMFLIMKRKKKHDPTVTDVISFEGPPRLYSYYVLKSATNNFSSENLIGEGSFGCVYRGVMRDGTLAAVKVFNMDQHGASRSFLAECEALRYVRHRNLVKILSACSSPTFKALVLQFMPNGSLEKWLHHGGEDGRQRLNLKQRMDIVVEVASAMEYLHHNCETPVVHCDLKPSNVLLDQDMTAHVGDFGLARILHGAASDHQISSTLGLKGSIGYIAPEYGLGGGVSTKGDVYCFGILVLEMFTGKKPTQEMFSGEFSLRRWVEAAVPDQVMGIVDNELEGDCKILGVEYLNSVIQIGLSCASEKPEDRPDMKDVSAMMEKTRAVLFTAPTVICNSQC* 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0868 1003 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 783 996 - -
Vvi8g0868 1003 ProSitePatterns Serine/Threonine protein kinases active-site signature. 830 842 IPR008271 GO:0004672|GO:0006468
Vvi8g0868 1003 FunFam Serine-threonine protein kinase plant-type 690 782 - -
Vvi8g0868 1003 SUPERFAMILY L domain-like 340 623 - -
Vvi8g0868 1003 Gene3D Ribonuclease Inhibitor 333 635 IPR032675 -
Vvi8g0868 1003 Pfam Protein tyrosine and serine/threonine kinase 710 981 IPR001245 GO:0004672|GO:0006468
Vvi8g0868 1003 CDD STKc_IRAK 713 986 - -
Vvi8g0868 1003 ProSiteProfiles Protein kinase domain profile. 707 991 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0868 1003 SUPERFAMILY Protein kinase-like (PK-like) 684 984 IPR011009 -
Vvi8g0868 1003 SMART serkin_6 707 984 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0868 1003 SMART LRR_typ_2 169 193 IPR003591 -
Vvi8g0868 1003 SMART LRR_typ_2 488 513 IPR003591 -
Vvi8g0868 1003 SMART LRR_typ_2 97 120 IPR003591 -
Vvi8g0868 1003 SMART LRR_typ_2 121 145 IPR003591 -
Vvi8g0868 1003 SMART LRR_typ_2 440 464 IPR003591 -
Vvi8g0868 1003 SMART LRR_typ_2 217 241 IPR003591 -
Vvi8g0868 1003 SMART LRR_typ_2 561 584 IPR003591 -
Vvi8g0868 1003 SMART LRR_typ_2 416 439 IPR003591 -
Vvi8g0868 1003 Gene3D Transferase(Phosphotransferase) domain 1 783 993 - -
Vvi8g0868 1003 FunFam LRR receptor-like serine/threonine-protein kinase EFR 335 639 - -
Vvi8g0868 1003 SUPERFAMILY L domain-like 31 326 - -
Vvi8g0868 1003 Gene3D Phosphorylase Kinase; domain 1 687 782 - -
Vvi8g0868 1003 Pfam Leucine rich repeat 418 477 IPR001611 GO:0005515
Vvi8g0868 1003 Pfam Leucine rich repeat 519 574 IPR001611 GO:0005515
Vvi8g0868 1003 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Vvi8g0868 1003 Gene3D Ribonuclease Inhibitor 30 189 IPR032675 -
Vvi8g0868 1003 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 338 985 - -
Vvi8g0868 1003 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 70 334 - -
Vvi8g0868 1003 Gene3D Ribonuclease Inhibitor 194 262 IPR032675 -
Vvi8g0868 1003 ProSitePatterns Protein kinases ATP-binding region signature. 713 735 IPR017441 GO:0005524
Vvi8g0868 1003 Gene3D Ribonuclease Inhibitor 263 332 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0868 Vvi-Chr8 15013272 15016389 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0868 28 994 Receptor kinase-like Gene Family AT3G47570 43.579 0.0 741
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vvi8g0868 PK_Tyr_Ser-Thr 1.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0868 - - vvi:100252877 1899.02