LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi8g0864	ATGGGAACCGATTGGAGGAGGAGGACGAAGACTCTGACCATGTATCTGAGACTAGTGACTCTGCTCTTCCTCCTGGCAAGCTTAGCCTCAGGGGAAGATGTGAGTTTCACCTACAATGGATTCCAAACGGCGGCCAACCTGAGCCTTGATGGCTTAGCCCAGTTCACACCCAATGGTCTGCTGATCCTCACCAACCGCACCAAACAGGAAACTGGTCACGCCTTCTACTCACATCCCATGAGATTCAAGAATTCCTCCAACGCCCCTGCTTTTTCCTTCTCTACTACATTTGTGTTCGCCATCCATCCTCAATATCCGACTCTTAGCGGTCACGGGATTGCTTTCGTCATTGCACCCACAAGAGGCCTCCCGGGAGCTCTTCCCAGCCAACATCTAGGCCTCTTTTCCGATGCCAACAATGGCAATTCCACCAATCACATCGTGGCTGTAGAGCTTGATACCATCCAGAACGAGGAGTTGGGTGATATCAATGACAACCATGTTGGAATTGATATCAACGGGTTGAAGTCTGACAAAGCTGCTCCAGCAGGTTATTTTGCTAGCAAGAATGGAGATTTTAAAAACTTGAGCCTTATTAGTGGCCGACCCATGCAAGTGTGGGTGGACTATAACGCCTTGGAGAAGCAAATTGATGTGAGATTGGCTCCAGTCAGTGTTGATAAACCTGATATTCCGCTGCTGTCCTTGCCCCGCGATCTTTCTCTAATCCTTAACAATACCATGTATGTTGGCTTCTCATCTTCTACCGGTTCAGTCCTAACATCTCATTATCTTCTGGGATGGAGCTTTAAGATGAATGGTCAGGCTCAACCGCTTGCTATTTCTCAGCTTCCTAAGCTTCCCCGCATAGGAGGACAGAAGAAATCCGCATTCCTGACAAGTGGGTTGCCAGTGATTTGTGTAGTTTCTATTTTAGCAGTGATGTCAGGGGCAGTTTATCTTATAAGAAGGAAGAAGAAGTTCGCGGAAGAGCTTGAAGATTGGGAACTTGATTATGGGCCTCACAGATTCAAATACAAGGATCTGTATTTTGCAACCAAAGGGTTCAAGGACAAAGAGCTATTGGGGAGCGGGGGATTTGGCAGGGTCTATAGAGGTGTATTGCCCACATCAAAACTTGAGATTGCAGTGAAGAAGATCTCTCATGAATCAAGACAAGGAATGAAAGAGTTTGTTGCAGAAATTGTTAGCATTGGCCGTCTCCGTCACAGGAACATAGTGTCGCTCTTGGGCTACTGCCGCCGCAAAGGGGAGCTTCTTTTGGTCTATGACTACATGCCCAATGGAAGTCTGGACAAGTACCTCTATGACCAACCCAAGGTCACCCTCAATTGGAACCAAAGATTCAGAGTTCTCAAAGGTGTAGCATCTGGGTTGTCCTATCTACACGGAGAATGGGAGCAAGTCGTGGTTCACAGAGATGTCAAGGCCAGCAATGTCTTGTTAGATGGTGAACTGAATGGAAGATTAGGAGATTTTGGCCTTGCTAGATTGTACGATCATGGAACGGATCCTCAAACAACCCATGTTGTGGGAACTCTTGGGTATCTCGCCCCAGAGCACACTAGAACCGGCAAGGCCACAACAAGGACTGATGTCTATGCTTTTGGCGCCTTTCTGCTTGAGGTTGCTTGCGGAAGAAGGCCGATAGCTCCAATGGAGGATCTCATCTTGGTTGATTGGGTGTTTTTTTTCTGGAACAGAGGTGAAATCCTTCAGGCAAGTGATCCAAAATTGGGTGTTGATTATAATGCAGAGGAAATGGAGTTGGTATTGAAGCTTGGCTTGATGTGCTCTCATTCAGAACCAAATGCTAGGCCAAGCATGCCACAAGTTGTACAGTACTTGGAGAGGACAGTTCCTTTGCCAGAGTTTACATCCCTGGGTCTTTCTGCCAATGGCCTATCATTTGCCCATCGTGAAGGTTTTGATGATTTTGCTTTGTCATATCCATTCTCTTTGGATAAGACATTCTCCCATGCATCCACTGTTCCAGAGTCTCTCCTCTCTGGAGGACGTTGA	2043	0.4699	MGTDWRRRTKTLTMYLRLVTLLFLLASLASGEDVSFTYNGFQTAANLSLDGLAQFTPNGLLILTNRTKQETGHAFYSHPMRFKNSSNAPAFSFSTTFVFAIHPQYPTLSGHGIAFVIAPTRGLPGALPSQHLGLFSDANNGNSTNHIVAVELDTIQNEELGDINDNHVGIDINGLKSDKAAPAGYFASKNGDFKNLSLISGRPMQVWVDYNALEKQIDVRLAPVSVDKPDIPLLSLPRDLSLILNNTMYVGFSSSTGSVLTSHYLLGWSFKMNGQAQPLAISQLPKLPRIGGQKKSAFLTSGLPVICVVSILAVMSGAVYLIRRKKKFAEELEDWELDYGPHRFKYKDLYFATKGFKDKELLGSGGFGRVYRGVLPTSKLEIAVKKISHESRQGMKEFVAEIVSIGRLRHRNIVSLLGYCRRKGELLLVYDYMPNGSLDKYLYDQPKVTLNWNQRFRVLKGVASGLSYLHGEWEQVVVHRDVKASNVLLDGELNGRLGDFGLARLYDHGTDPQTTHVVGTLGYLAPEHTRTGKATTRTDVYAFGAFLLEVACGRRPIAPMEDLILVDWVFFFWNRGEILQASDPKLGVDYNAEEMELVLKLGLMCSHSEPNARPSMPQVVQYLERTVPLPEFTSLGLSANGLSFAHREGFDDFALSYPFSLDKTFSHASTVPESLLSGGR*	681

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi8g0864	680	FunFam	Lectin-domain containing receptor kinase A4.3	341	432	-	-
	Vvi8g0864	680	Gene3D	Phosphorylase Kinase; domain 1	341	432	-	-
	Vvi8g0864	680	ProSiteProfiles	Protein kinase domain profile.	356	632	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi8g0864	680	SUPERFAMILY	Protein kinase-like (PK-like)	337	631	IPR011009	-
	Vvi8g0864	680	FunFam	L-type lectin-domain containing receptor kinase V.9	33	277	-	-
	Vvi8g0864	680	SMART	serkin_6	356	623	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi8g0864	680	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	477	489	IPR008271	GO:0004672\|GO:0006468
	Vvi8g0864	680	Pfam	Legume lectin domain	34	285	IPR001220	GO:0030246
	Vvi8g0864	680	Gene3D	Transferase(Phosphotransferase) domain 1	433	635	-	-
	Vvi8g0864	680	PANTHER	-	29	628	-	-
	Vvi8g0864	680	ProSitePatterns	Protein kinases ATP-binding region signature.	362	386	IPR017441	GO:0005524
	Vvi8g0864	680	ProSitePatterns	Legume lectins beta-chain signature.	148	154	IPR019825	-
	Vvi8g0864	680	FunFam	L-type lectin-domain containing receptor kinase S.4	433	635	-	-
	Vvi8g0864	680	CDD	lectin_legume_LecRK_Arcelin_ConA	34	274	IPR001220	GO:0030246
	Vvi8g0864	680	Pfam	Protein kinase domain	356	621	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi8g0864	680	SUPERFAMILY	Concanavalin A-like lectins/glucanases	34	290	IPR013320	-
	Vvi8g0864	680	CDD	STKc_IRAK	362	625	-	-
	Vvi8g0864	680	Gene3D	-	32	283	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi8g0864	Vvi-Chr8	14993216	14995258	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi8g0864	28	680	Receptor kinase-like Gene Family	AT3G53810	63.333	0.0	855

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Vvi8g0864		Pkinase	7e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi8g0864	-		-	vvi:100854743	1341.25