Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0855 ATGAGATATTGTATTCACATTTTCACATCGTTCGTGAATATAACGCTGGCTGAAGCCTGTAGCCCAACGCCGTTACCCAACTCACGTTATTGTCATTATGTCTCCAAGCATAACAAACGGCGCGTTTTGACCGTTCGGATCCTCCAGGATAGCTTAAAAGCCCTCGACCTACATTCACCCTCGTCCTCCCCACTTTGTCTCTCTGTGGGAGCGGTAAATTTTCTCCACCAATTAGGGTTTTTTTCCCATTTCTGTATTTCTTGGCTATTTGACTTCTGCCTGAGATTTGGACTGTTTTGGTTGAAATCTGTGGAATCTGAATTGCGAGAAATTTCAAGAAAGGGAAATAACCCTAGGTTTCGTTCGATCCTCAACTTAGATATTGATTTGCTTGATGCAGAAGATCGATCGATTAGAGAGATGATGGCTGCGAGTGGATCTTCATTTTGGTGTTACAGATGCAACAGGTTCATCAGGGTTTGGGCTCAAGATGCAATCCTATGTCCTGATTGCGGTTCAGGATTCGTGGAGCAAATCAACAATCTCTCTCGATCTCCACGGCGTCGTCGACTTCCAGGATCGGCAATGTACCTCGAAAATAGGAATGCTTTGGATCAGGATCCGGTTCCTAGAATTCGCCGGGCCAGGAGGAGTGGAGGTGATCGGTCGCTTTTCAACCCTGTTATCGTCCTCCGCGGTTCTGCAGATGTAAATGGCAGTGAAGGTGGCGGTACCAGTGGTGAAAGGGGAAACTTTGAATTGTATTATGATGATGGTACAGGATCGGGACTTAGGCCGTTGCCTGCTAGCGTGTCCGAGTTCCTGATGGGTTCCGGGTTTGATCGTCTTCTTGATCAATTGGCACAATTAGAAATCAATGGAGCTGGGCGGTGTGAGCACCCTCCGGCTTCAAAGGCTGCTGTTGAGTCTTTGCCCACCATCAAGATTGTTGCTAGTCATGTTTTGAGTGAGTCCCATTGTGCTGTGTGCAAAGAACCTTTCGAACTTGACTCGGAGGCTCGTGAGTTGCCATGCAAGCACATTTACCATTCTGATTGTATCCTTCCTTGGCTCTCTCTCCGTAATTCTTGCCCTGTTTGCCGCCATGAGTTGCCTACGGATTCTCATGAAGGTGGAAGTTCAGGACATCTGCAGTCTCCCGGTCTGACAGAAGAAGACAATGTGGGGCTAACAATATGGAGACTCCCTGGTGGTGGTTTTGCAGTAGGAAGGTTTACTGGAGGAAGACAAGCTGCAGAACGTGAGCTTCCTGTTGTTTTCACGGAAATGGATGGCGGATTTAATCCCAGTGGTGCTTCCAGAAGGAATCCGTGGGTTGCAAGTGGAATAAGATCAAGAGAGGGTGGTGGATTCGGACGTGTTATGCGCAATTTCTTATCTGTTTTTGGGAGGTTTAGAATTTCATCCTCTCGATCTAGTCAAGAAACTGGGTCTAGGCAGGGAAGTCACCCTGAAACAGTGTTCGAGAGATCCTCAAGAAGGCACAACCAGTCTTGA 1518 0.4743 MRYCIHIFTSFVNITLAEACSPTPLPNSRYCHYVSKHNKRRVLTVRILQDSLKALDLHSPSSSPLCLSVGAVNFLHQLGFFSHFCISWLFDFCLRFGLFWLKSVESELREISRKGNNPRFRSILNLDIDLLDAEDRSIREMMAASGSSFWCYRCNRFIRVWAQDAILCPDCGSGFVEQINNLSRSPRRRRLPGSAMYLENRNALDQDPVPRIRRARRSGGDRSLFNPVIVLRGSADVNGSEGGGTSGERGNFELYYDDGTGSGLRPLPASVSEFLMGSGFDRLLDQLAQLEINGAGRCEHPPASKAAVESLPTIKIVASHVLSESHCAVCKEPFELDSEARELPCKHIYHSDCILPWLSLRNSCPVCRHELPTDSHEGGSSGHLQSPGLTEEDNVGLTIWRLPGGGFAVGRFTGGRQAAERELPVVFTEMDGGFNPSGASRRNPWVASGIRSREGGGFGRVMRNFLSVFGRFRISSSRSSQETGSRQGSHPETVFERSSRRHNQS* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0855 505 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 292 374 IPR013083 -
Vvi8g0855 505 MobiDBLite consensus disorder prediction 476 505 - -
Vvi8g0855 505 Pfam zinc-ribbon 148 179 IPR039525 GO:0061630
Vvi8g0855 505 CDD RING-H2_RNF126-like 327 368 - -
Vvi8g0855 505 FunFam E3 ubiquitin-protein ligase RING1-like 289 374 - -
Vvi8g0855 505 Pfam Protein of unknown function (DUF1117) 395 499 IPR010543 -
Vvi8g0855 505 MobiDBLite consensus disorder prediction 476 492 - -
Vvi8g0855 505 Pfam Ring finger domain 326 368 IPR001841 -
Vvi8g0855 505 SUPERFAMILY RING/U-box 307 374 - -
Vvi8g0855 505 ProSiteProfiles Zinc finger RING-type profile. 327 368 IPR001841 -
Vvi8g0855 505 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 225 372 - -
Vvi8g0855 505 SMART ring_2 327 367 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0855 Vvi-Chr8 14921128 14922764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0855 266 377 C3H Transcription Factor Family AT5G01980 49.107 1.77e-28 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0855 - - vvi:100244277 975.696