Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0840 ATGGATGAACTAATGGCTGCCTGGACAGAAGGATCGGAAGATGAACTGGTGAGAGAGCTTCTTGATGATGAATCTCCTTTCTTGGTGGTGCCGCAGGAGACGGTTGAATCCAAACTGATGAGTTCGTCAAGTGAACAGGCTATTAGTCGGCTGGTATCCACTGCCTACACTGGGCCAACAATTGAAGATATAGAGAGTGCTTTATCTCTGACAACCGGGAAATGCCAATCAGAAGAGAATTCACAAGCCAGAACCTCAATACATGAAAGGGATTTAAGTAAGATTGAGAACAAGTATACCCTGAAAATTAAAAGCTGCGGCAATGGGATGGCTGATGATGGTTATAAATGGAGGAAGTATGGGCAGAAATCCATTAAGAATAGCCCAAATCCAAGGAGCTATTACAGGTGCACGAACCCTAGGTGCAGCGCCAAAAAACAGGTGGAGAAGTCGAGTGAGGACCCGGACACCTTGATCATCACCTATGAAGGGCTCCACCTCCACTTCGCCTACCCTTTCTTCCTTATCAGCCCACCTCAGAATGTCCCTTCACCATCCAAGAAGCCCAAAAGGATCGGCTTACAAGAAGGCCAAGACCAAGTCCACGACGCCCCACAAATACAAGAAACCCAGGGCAGCCCACCCACGGCTGATCACGGCTCGTTCCCAACCATGTTCACCCACGTCCAGGAGGAGGACGCCGCCGAGAAAATGGGTCCACAAGGGTTGCTGGAAGATATGGTGCCTCTCATGATTCGAAATCCAGCAAACAACATCACTTCCTCCACGTCTTCCTCCTCTTCTTACCCTTCTCCTCCAAACTCACCTTCTTCTCCTTCTTGCTCGCTGGGCTATTCTCCTTCCTACTTCGATATTAGTAAACGCTATAGCATTAGGTGA 900 0.4867 MDELMAAWTEGSEDELVRELLDDESPFLVVPQETVESKLMSSSSEQAISRLVSTAYTGPTIEDIESALSLTTGKCQSEENSQARTSIHERDLSKIENKYTLKIKSCGNGMADDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCSAKKQVEKSSEDPDTLIITYEGLHLHFAYPFFLISPPQNVPSPSKKPKRIGLQEGQDQVHDAPQIQETQGSPPTADHGSFPTMFTHVQEEDAAEKMGPQGLLEDMVPLMIRNPANNITSSTSSSSSYPSPPNSPSSPSCSLGYSPSYFDISKRYSIR* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0840 299 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 51 202 IPR044810 GO:0003700
Vvi8g0840 299 MobiDBLite consensus disorder prediction 255 299 - -
Vvi8g0840 299 Gene3D WRKY domain 100 164 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi8g0840 299 SUPERFAMILY WRKY DNA-binding domain 109 168 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vvi8g0840 299 ProSiteProfiles WRKY domain profile. 106 171 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi8g0840 299 MobiDBLite consensus disorder prediction 255 271 - -
Vvi8g0840 299 MobiDBLite consensus disorder prediction 180 223 - -
Vvi8g0840 299 Pfam WRKY DNA -binding domain 112 168 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vvi8g0840 299 MobiDBLite consensus disorder prediction 201 220 - -
Vvi8g0840 299 FunFam WRKY transcription factor 100 172 - -
Vvi8g0840 299 SMART WRKY_cls 111 170 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0840 Vvi-Chr8 14828155 14830056 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0840 1 254 WRKY Transcription Factor Family AT5G43290 40.672 1.54e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vvi8g0840 WRKY 1.6e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0840 - - vvi:100254510 562.762