Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0831 ATGAGTATTGTAGCAGGGTCATATGAGAAATTCATATGGGGATTCAAACTCAAAAGCCTAAAGAAATCCCAAACCCTAACCTTAACCCCACTCTTCTCCTACCCCTCCCACCTCTCCCCCATCAAGTCTGTTGCTGTTGCTGGACCCGTTGCGGCCTCCGGCGGCACTGATGACTCCGTTAAGGTCTACGACCTCTCCTCCTGCTCCGAGATCGGAACCCTAACCGATCACTCTGGCGCTGTCACCTCCCTCTCCTTCTTTTCTCCCTCCTCTCTCTCCTTTCCCCGCAACCTCCTGTCCGCCTCCGATGACGGCTCCGTTTGCATCTACGACGCCGACCCCTTCGTCCACCTCAAGACCATCGCCGCCCACAAGAAGGGGGTGAACGACCTCTCCATCCACCCCTCGGGCAAGTTAGCCTTGACTGTGGGGAGGGACTCGTGCTTGGCCATGTTGAATCTCGTGAGAGGGAGGAGGAGTTTTTACTGCAGATTGGGTAAGGAGGCGAGTTTGGTGAAATTTGATTTGAGCGGTGACAAGTTCTATATGGTTATGGAGGAGAAGGTGTGTGTTCATGAGGCAGAGGATGCGAAATTGGTCTTCGAAATGGAGAACCCGAAACGGGTTCTTTGTGCAGCACCTGGCTCGAATGGACTTCTATTTACTGGTGGTGAGGACCGGAATATTACTGCATGGGACACAGCTAGTGGGAAGGTTGCATACTGTATCGAGGATGCACATTCAGCCCGTGTGAAAGGTATTGTTGTGCTGTCTAGGAATGATAGTGGCACTGCTGATGATGATCCGTACATGGTGGCATCTGCATCATCAGACGGGGTTATTCGTGTTTGGGATATTCGCATGGCCAACAGGGAGAAGCCGAATCCACTAGCAGAGGCTAATACGAAATCAAGGCTGACTTGTCTTGCTGGATCCTCCCTAAAATCTTTCAAAGGGCCACAGGTTGTGAGCAATGCCCCAAAAAAAGAGCAGGATGCAGTGATGGAAGGTTCATGA 1017 0.5172 MSIVAGSYEKFIWGFKLKSLKKSQTLTLTPLFSYPSHLSPIKSVAVAGPVAASGGTDDSVKVYDLSSCSEIGTLTDHSGAVTSLSFFSPSSLSFPRNLLSASDDGSVCIYDADPFVHLKTIAAHKKGVNDLSIHPSGKLALTVGRDSCLAMLNLVRGRRSFYCRLGKEASLVKFDLSGDKFYMVMEEKVCVHEAEDAKLVFEMENPKRVLCAAPGSNGLLFTGGEDRNITAWDTASGKVAYCIEDAHSARVKGIVVLSRNDSGTADDDPYMVASASSDGVIRVWDIRMANREKPNPLAEANTKSRLTCLAGSSLKSFKGPQVVSNAPKKEQDAVMEGS* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0831 338 SMART WD40_4 196 233 IPR001680 GO:0005515
Vvi8g0831 338 SMART WD40_4 27 64 IPR001680 GO:0005515
Vvi8g0831 338 SMART WD40_4 114 153 IPR001680 GO:0005515
Vvi8g0831 338 SMART WD40_4 236 285 IPR001680 GO:0005515
Vvi8g0831 338 SMART WD40_4 67 111 IPR001680 GO:0005515
Vvi8g0831 338 MobiDBLite consensus disorder prediction 319 338 - -
Vvi8g0831 338 Pfam WD domain, G-beta repeat 70 111 IPR001680 GO:0005515
Vvi8g0831 338 Pfam WD domain, G-beta repeat 30 64 IPR001680 GO:0005515
Vvi8g0831 338 Pfam WD domain, G-beta repeat 265 285 IPR001680 GO:0005515
Vvi8g0831 338 Gene3D - 2 115 IPR015943 GO:0005515
Vvi8g0831 338 SUPERFAMILY WD40 repeat-like 4 287 IPR036322 GO:0005515
Vvi8g0831 338 ProSiteProfiles Trp-Asp (WD) repeats profile. 271 294 IPR001680 GO:0005515
Vvi8g0831 338 PRINTS G protein beta WD-40 repeat signature 272 286 IPR020472 -
Vvi8g0831 338 PRINTS G protein beta WD-40 repeat signature 98 112 IPR020472 -
Vvi8g0831 338 PRINTS G protein beta WD-40 repeat signature 220 234 IPR020472 -
Vvi8g0831 338 Gene3D - 116 334 IPR015943 GO:0005515
Vvi8g0831 338 PANTHER PAK1 INTERACTING PROTEIN 1 1 331 - -
Vvi8g0831 338 ProSitePatterns Trp-Asp (WD) repeats signature. 272 286 IPR019775 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0831 50 302 U-box Gene Family AT1G04510 24.521 3.53e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0831 K14830 - vvi:100257947 643.269