LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi8g0827	ATGGCTCTTCTCACTCTTCTTTCCCTTGCTTCACTCCTCTCCTTTCTTACCCTGGTTCATGCTCGAATCCCCGGCGTTTACACCAGTGGGCCGTGGGAGAGTGCTCATGCCACATTCTACGGTGGCAGCGATGCCTCCGGTACTATGGGGGGTGCTTGTGGGTATGGGAATCTCTACAGCCAGGGCTACGGAGTCAACACGGCAGCACTGAGCACCGCACTGTTCAACAGCGGGCTCAGCTGTGGCGCTTGCTTTGAGATCAAGTGCGCCAACGACCCCAAGTGGTGCCACTCCGGCAGCCCCTCCATCTTCGTCACCGCCACCAACTTCTGCCCACCTAACTACGCTCTTCCCAGCGACAATGGCGGCTGGTGTAACCCTCCTCGTCCCCACTTCGACCTTGCCATGCCCATGTTTCTCAAGATCGCCGAGTACCGCGCCGGAATTGTCCCCGTTGCTTTCCGTCGGGTATCCTGCCGAAAGAGTGGAGGAATCAGATTCACCGTCAACGGTTTCCGCTACTTCAACCTGGTTCTGGTCACCAACGTCGCGGGTGCAGGGGATATCGTGCGGGTGAGCATCAAAGGATCCAAAACCGGGTGGATGAGCATGAGCCGCAACTGGGGACAGAACTGGCAGTCCAACGCCGTTCTGGTGGGCCAATCACTCTCCTTCAGAGTCACCGGAAGTGACCGCCGCACCTCCACCTCCTGGAACGTCGCCCCCGCTAACTGGCAGTTCGGTCAAACTTTCTCCGGCAGGAACTTCCGGATCTAA	777	0.5843	MALLTLLSLASLLSFLTLVHARIPGVYTSGPWESAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNSGLSCGACFEIKCANDPKWCHSGSPSIFVTATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAFRRVSCRKSGGIRFTVNGFRYFNLVLVTNVAGAGDIVRVSIKGSKTGWMSMSRNWGQNWQSNAVLVGQSLSFRVTGSDRRTSTSWNVAPANWQFGQTFSGRNFRI*	259

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi8g0827	258	ProSiteProfiles	Expansin, Cellulose-binding-like domain profile.	174	253	IPR007117	-
	Vvi8g0827	258	PRINTS	Expansin signature	62	76	IPR002963	GO:0009664
	Vvi8g0827	258	PRINTS	Expansin signature	122	139	IPR002963	GO:0009664
	Vvi8g0827	258	PRINTS	Expansin signature	89	100	IPR002963	GO:0009664
	Vvi8g0827	258	PRINTS	Expansin signature	175	196	IPR002963	GO:0009664
	Vvi8g0827	258	PRINTS	Expansin signature	103	113	IPR002963	GO:0009664
	Vvi8g0827	258	PRINTS	Expansin signature	210	231	IPR002963	GO:0009664
	Vvi8g0827	258	PRINTS	Expansin signature	139	152	IPR002963	GO:0009664
	Vvi8g0827	258	PRINTS	Expansin signature	163	175	IPR002963	GO:0009664
	Vvi8g0827	258	PRINTS	Expansin signature	239	255	IPR002963	GO:0009664

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi8g0827	Vvi-Chr8	14733277	14734895	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi8g0827	4	258	Expansin Gene Family	AT2G39700	80.392	2.26e-161	446

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi8g0827	-		-	vvi:100245911	528.865

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