Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0825 ATGGTTGATCACAATTGCAAATCTCTCTGTAGAGTAGGTGGAGTTGTGCTTACAATAATATCTTATGAAGCAGAAATAAACTATCTCGGGCAGTTGCAGCATCCTAATCTTGTGAAATTAATTGGTTACTGTTTAGAAGATGATCACCGGCTTTTGGTATATGAGTTCATGCCCAAGGGTAGCATGGAGAATCATTTATTCAGGAGAGGATCTTATTTCCAGCCGCTTTCTTGGAGTGTTCGAATGGAAGTTGCCATTGGTGCTGCAAGGGGGCTTGCCTTTCTTCACAATGCTGAAACACAAGTCATCTATCGGGACTTCAAGACTTCTAATATACTGCTTGACTCGAACTACAATGCAAAACTTTCTGATTTTGGGTTGGCCAGGGATGGGCCAACTGGAGATAAGAGCCATGTCTCGACCAGAGTTATGGGGACCTATGGATATGCTGCTCCGGAGTACCTATCTACAGGTCATCTAACAACCAAGAGTGATGTATATAGTTTTGGAGTAGTTCTTCTAGAAATGTTATCTGGTCGCCGAGCAGTAGACAAGAATAGGCCATCTGGAGAGCACAACCTGGTGGAGTGGGCAAAACCTTACCTGACTAGCAAGCGTAAAATTTTTCGTGTTATTGATACCCGTCTTGAAGGTCAATACTCGCTAGATCGGGCCCAAAAGGCAGCTATGCTTGCACTTCAATGCCTATTAACAGAGCCCAGGGCCAGACCAAACATGGATGAGGTGGTAACAGCCTTGGAACAGATTTGCGAACCAAAAGACAAGTTGAGAAGTACTACAAAAGAGCAGCATTCGAATCATCAGAGCCGACCCAATGATCGACCTAGATATCACAGAAGAAGTGCGGATGCAAGTTCTTATCCCAAGCCTTCTGTTGCCATACTTTAG 909 0.4411 MVDHNCKSLCRVGGVVLTIISYEAEINYLGQLQHPNLVKLIGYCLEDDHRLLVYEFMPKGSMENHLFRRGSYFQPLSWSVRMEVAIGAARGLAFLHNAETQVIYRDFKTSNILLDSNYNAKLSDFGLARDGPTGDKSHVSTRVMGTYGYAAPEYLSTGHLTTKSDVYSFGVVLLEMLSGRRAVDKNRPSGEHNLVEWAKPYLTSKRKIFRVIDTRLEGQYSLDRAQKAAMLALQCLLTEPRARPNMDEVVTALEQICEPKDKLRSTTKEQHSNHQSRPNDRPRYHRRSADASSYPKPSVAIL* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0825 302 FunFam Probable serine/threonine-protein kinase PBL8 57 274 - -
Vvi8g0825 302 MobiDBLite consensus disorder prediction 261 302 - -
Vvi8g0825 302 MobiDBLite consensus disorder prediction 261 290 - -
Vvi8g0825 302 PANTHER OS01G0588500 PROTEIN-RELATED 24 256 - -
Vvi8g0825 302 ProSitePatterns Serine/Threonine protein kinases active-site signature. 102 114 IPR008271 GO:0004672|GO:0006468
Vvi8g0825 302 Gene3D Transferase(Phosphotransferase) domain 1 58 282 - -
Vvi8g0825 302 SUPERFAMILY Protein kinase-like (PK-like) 22 267 IPR011009 -
Vvi8g0825 302 PIRSF TyrPK_CSF1-R 226 298 - -
Vvi8g0825 302 PIRSF TyrPK_CSF1-R 73 181 - -
Vvi8g0825 302 PIRSF TyrPK_CSF1-R 23 85 - -
Vvi8g0825 302 Gene3D Phosphorylase Kinase; domain 1 17 57 - -
Vvi8g0825 302 ProSiteProfiles Protein kinase domain profile. 1 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0825 302 Pfam Protein kinase domain 23 250 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0825 Vvi-Chr8 14725910 14728019 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0825 25 253 Glycoside Hydrolase AT3G07070 54.783 2.27e-83 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vvi8g0825 Pkinase 7.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0825 - - vvi:100251053 565.459