Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0824 ATGAAGGAGAGGCAGCGTTGGAGGGCTGAAGAGGACGCTCTATTACGTGCTTATGTGAGACAATATGGCCCGAGGGAATGGAACCTTGTGTCACAGCGTATGAACACGCCCCTTGGTAGGGATGCCAAATCTTGCCTAGAAAGGTGGAAGAATTACCTCAGACCTGGAATTAAGAAAGGATCCCTCACTGAAGAGGAGCAACGTCTTGTAATTCGTCTTCAGGCCAAACACGGCAACAAATGGAAGAAAATTGCAGCTGAAGTCCCTGGACGTACTGCTAAGAGATTGGGGAAGTGGTGGGAAGTGTTCAAAGAGAAGCAGCAGAGAGAGCAGAAAGAGAACAACAAGGTTGTGGACCCCATTGAGGAGGGCAAGTACGATCGGATTCTAGAGACTTTTGCAGAGAAGTTAGTGAAAGAGCGTCCTGCCCCAGCATTTCTGATGGCTACTTCAAACGGAAACTTTCTTCATCCTGATCCACCTGCTCCTCCCCCACCAACTCTACTTCCTCCTTGGCTTTCCAATTCCAACTGCACCTCCACTGTTAGGCCACCCTCCCCTTCTGTCACCTTAAGTCTCTGTCCCTCAACAGTTGCAACCTCACCGACAATTCCATGGCTGCAGCCAGAGAGAGGGCCAGACGCCACCCCGCTTGTTTTGGGCAACTTGCCACCCCATGGGGCAGTCCCCACGTCTGGAGAGAACTTACTGATTTCAGAGCTAGTGGAGTGCTGCAGGGAGTTGGAAGAAGGGCACCGAGCTTGGGCAGCACATAAGAAGGAGGCAGCCTGGAGGTTAAGAAGGGTTGAGCTGCAACTGGAATCGGAGAAAGCATGCCGAAGGAGGGAAAAAATGGAAGAGATAGAATCAAAGGTGAAGGCTCTTAGGGAAGAACAGAAGGCTACACTGGATAGGATTGAGGCTGAATACAGGGAACAGTTAGCAGGACTAAGGAGGGATGCAGAATCCAAGGAGCAGAAGTTGGCTGAGCAGTGGAGTGCAAAGCACTTGCGCCTTACCAGATTTATTGAGCAGATGGGATGCAGACCCAGGCTTGCCGAGCCAAATGGCCGGTGA 1077 0.5135 MKERQRWRAEEDALLRAYVRQYGPREWNLVSQRMNTPLGRDAKSCLERWKNYLRPGIKKGSLTEEEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKENNKVVDPIEEGKYDRILETFAEKLVKERPAPAFLMATSNGNFLHPDPPAPPPPTLLPPWLSNSNCTSTVRPPSPSVTLSLCPSTVATSPTIPWLQPERGPDATPLVLGNLPPHGAVPTSGENLLISELVECCRELEEGHRAWAAHKKEAAWRLRRVELQLESEKACRRREKMEEIESKVKALREEQKATLDRIEAEYREQLAGLRRDAESKEQKLAEQWSAKHLRLTRFIEQMGCRPRLAEPNGR* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0824 358 SMART sant 58 106 IPR001005 -
Vvi8g0824 358 SMART sant 3 55 IPR001005 -
Vvi8g0824 358 SUPERFAMILY Homeodomain-like 4 98 IPR009057 -
Vvi8g0824 358 Coils Coil 307 327 - -
Vvi8g0824 358 Gene3D - 62 119 - -
Vvi8g0824 358 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Vvi8g0824 358 CDD SANT 6 53 IPR001005 -
Vvi8g0824 358 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Vvi8g0824 358 Pfam Myb-like DNA-binding domain 7 68 - -
Vvi8g0824 358 Gene3D - 4 58 - -
Vvi8g0824 358 FunFam MYB-related transcription factor 4 58 - -
Vvi8g0824 358 CDD SANT 63 104 IPR001005 -
Vvi8g0824 358 Coils Coil 285 305 - -
Vvi8g0824 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 108 IPR017930 -
Vvi8g0824 358 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 1 353 - -
Vvi8g0824 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 53 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0824 Vvi-Chr8 14716184 14717260 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0824 1 349 MYB Transcription Factor Family AT2G37630 70.959 1.44e-173 485
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi8g0824 Myb_DNA-bind_6 2e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0824 K09422 - vvi:100256209 709.138