Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0821 ATGGCTGATGTGAAACTGGAAGAGGAGGAGTGCTGTGTTGAGAATAAGCAACTGGTGACCGCATCAAGCTCCTCTCTTTCTGAAGGCAGTGGTAGTGTTACTGTCAAGTCCCCAGGCATATGCAGTCCAGCTACGACCTCGCCATCACATAGGAGGACGACTGGCCCTATTAGGCGAGCAAAGGGCGGTTGGACTCCACAGGAGGATGATACATTAAGAACTGCTGTAGCATACTTCAAGGGGAAGAGTTGGAAGAAAATAGCTGAGTTTTTTCCTGATCGATCAGAAGTGCAATGTCTGCACCGATGGCAAAAGGTTCTTAATCCAGAGCTTGTTAAAGGACCATGGACTCAAGAGGAGGATGATAAAATCACAGAACTGGTATCAAAATATGGGCCCACAAAATGGTCTGTCATAGCAAAGTCTTTGCCAGGTCGCATAGGGAAACAATGCCGAGAGCGGTGGCACAACCATTTAAATCCAGATATAAAAAAGGATGCTTGGACATTGGACGAAGAACTGGCACTCATGAATGCCCATAGTAAGCATGGGAATAAATGGGCTGAAATAGCAAAGGTTTTACCTGGAAGGACTGACAACTCAATAAAGAATCATTGGAATAGTTCCTTAAAGAAAAAGTTAGATTTCTACTTGGCTACTGGGAAACTTCCACCAGTTGTAAAGAGTGGTTTCCAAAATGGTGCAAAAGACACAAACAGAACCAATGCACCTGGAAAACTGCTTGGTTGTTCAAATAAAGGATCAGAATCTACAGCACAAACTTCATCAGGAACTACAGACTTATGTAAACTAGAAGAAGACAGCAAGGATCAGTTAGAGTCCTCAGCCCCATTACAAGATGCGGGTGTTTCTTTGAGTGTTCCTCCAAATGAGTCTGCTGATTCTGAAGATGCACAGTGCAAGCCATATTTATCCAAAATAGATTGTAGCTGTGGCAATTCAGAGTCAATATTAAGGTTTGAGAAGTGCAGGATCAATGGTAATATCGATGAAAGTAAAGTTGTTGGAACACCCTTGCAGCTTGGAATTCCAACCTATGATTCTTTGTACTATGAACCACCAAGACTAGAGAGTTGTGTTCCATTAGATTCAGATCTCATAAGCAAGTGTTGGATGCAGTATGAATGTGACACAAGTCCTTTTATGTCACCTATTAGTTTCTTCACTCCACCTTGTGTGAAGGGTAGTAGTTTGTCTATGCAAAGTCCACAATCAATCTTGAAAAATGCTGCCAGGACCTTTCCCAATACTCCTTCCATATTAAGAAAGAGAAAGACGGAGGCTCAAACACCTCTGCTCCCTACAAAAATTGGGAAAGCAGATCAGGAAGCAGTCAATGATAGTTTTCATGCATCTGATGAACAAGAAAGAACTGGGAATAGTTTAGAGAAGTCCGTGTCTCGAGATGGAAGTTCATGTGATAGTCCTGCTTGTCATGGTGATAACAGCATTGGTCTATGCAATGGTAAGGCTTTTAATGCATCTCCTCCATACCGATTAAGATCCAAACGAACTGCCGTTTTCAAGTCTGTGGAGAAACAACTTGAGTTTGCATTTGACCGAGAGAAGTGTGATGGGAATACCAAATCTACAGAGAAGGGGAATTCTCCTGTTGCTGAAGACTGCTTGCGTGCAACAAAGATGGGGGTTACCTAG 1677 0.427 MADVKLEEEECCVENKQLVTASSSSLSEGSGSVTVKSPGICSPATTSPSHRRTTGPIRRAKGGWTPQEDDTLRTAVAYFKGKSWKKIAEFFPDRSEVQCLHRWQKVLNPELVKGPWTQEEDDKITELVSKYGPTKWSVIAKSLPGRIGKQCRERWHNHLNPDIKKDAWTLDEELALMNAHSKHGNKWAEIAKVLPGRTDNSIKNHWNSSLKKKLDFYLATGKLPPVVKSGFQNGAKDTNRTNAPGKLLGCSNKGSESTAQTSSGTTDLCKLEEDSKDQLESSAPLQDAGVSLSVPPNESADSEDAQCKPYLSKIDCSCGNSESILRFEKCRINGNIDESKVVGTPLQLGIPTYDSLYYEPPRLESCVPLDSDLISKCWMQYECDTSPFMSPISFFTPPCVKGSSLSMQSPQSILKNAARTFPNTPSILRKRKTEAQTPLLPTKIGKADQEAVNDSFHASDEQERTGNSLEKSVSRDGSSCDSPACHGDNSIGLCNGKAFNASPPYRLRSKRTAVFKSVEKQLEFAFDREKCDGNTKSTEKGNSPVAEDCLRATKMGVT* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0821 558 PANTHER MYB PROTEIN-RELATED 61 132 - -
Vvi8g0821 558 FunFam Transcriptional activator Myb isoform A 113 165 - -
Vvi8g0821 558 CDD SANT 115 159 IPR001005 -
Vvi8g0821 558 ProSiteProfiles Myb-like domain profile. 56 107 IPR001005 -
Vvi8g0821 558 Gene3D - 166 224 - -
Vvi8g0821 558 SUPERFAMILY Homeodomain-like 58 114 IPR009057 -
Vvi8g0821 558 MobiDBLite consensus disorder prediction 19 53 - -
Vvi8g0821 558 MobiDBLite consensus disorder prediction 281 300 - -
Vvi8g0821 558 Pfam Myb-like DNA-binding domain 113 159 IPR001005 -
Vvi8g0821 558 Pfam Myb-like DNA-binding domain 165 208 IPR001005 -
Vvi8g0821 558 Pfam Myb-like DNA-binding domain 61 107 IPR001005 -
Vvi8g0821 558 MobiDBLite consensus disorder prediction 19 67 - -
Vvi8g0821 558 SUPERFAMILY Homeodomain-like 110 206 IPR009057 -
Vvi8g0821 558 ProSiteProfiles Myb-like domain profile. 160 210 IPR001005 -
Vvi8g0821 558 MobiDBLite consensus disorder prediction 228 304 - -
Vvi8g0821 558 Gene3D - 60 112 - -
Vvi8g0821 558 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 107 IPR017930 -
Vvi8g0821 558 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 164 214 IPR017930 -
Vvi8g0821 558 ProSiteProfiles Myb-like domain profile. 108 159 IPR001005 -
Vvi8g0821 558 FunFam Transcriptional activator Myb isoform A 60 112 - -
Vvi8g0821 558 CDD SANT 64 107 IPR001005 -
Vvi8g0821 558 MobiDBLite consensus disorder prediction 453 470 - -
Vvi8g0821 558 CDD SANT 167 210 IPR001005 -
Vvi8g0821 558 SMART sant 112 161 IPR001005 -
Vvi8g0821 558 SMART sant 60 109 IPR001005 -
Vvi8g0821 558 SMART sant 164 212 IPR001005 -
Vvi8g0821 558 MobiDBLite consensus disorder prediction 232 268 - -
Vvi8g0821 558 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 108 163 IPR017930 -
Vvi8g0821 558 FunFam Transcription factor MYB3R-2 166 232 - -
Vvi8g0821 558 Gene3D - 113 164 - -
Vvi8g0821 558 MobiDBLite consensus disorder prediction 424 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0821 Vvi-Chr8 14647976 14660032 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0821 2 540 MYB Transcription Factor Family AT3G09370 50.364 8.15e-159 461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi8g0821 Myb_DNA-binding 6.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0821 K09422 - vvi:100256181 1144.03