Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0816 ATGGGCAACGGATTCGGAAAGGTCGGCATCTGCTTCGCCGGTGCCGGAGAAGTTTCCCGGCGCCACGACATCGATATGATTCTGTCGGAGTCTCTGGACGAAGGGCTGGGTCACTCTTTCTGCTACATACGACCTCACCCATGTCGCATCTCTTCCTCCCAAGTCCACACCGAGTATTTCCAAACGACGACGTTTTGCTCCATCTCCGGCGCTTCTGTCAGCGCCAACACTGCCACTCCTCTCTCTACAGCTCTTCTTGATCCGTATTCCTACAACTGCAACCTCGATCGAGCCTCCGCGTTTGAGAGCTCCACCTCCTTCGCTTCAATCCCTCTACAACCGGTTCCGCGCTCCGGTACGCCACCCCGAAATACCGGGGGAGTACCGTCTTCGGGGCCGATTGAAAGAGGGTTCTTATCAGGCCCGATTGAGCGAGGTTTGTATTCGGGTCCGATGGAGAACAGTGGTCAGTTGCAGAGAAGTTTCTCAAATAGTGAATTTGGGTTCAAATCCAAATCCAAGAAGCGAGGTTTGATGAGAAATTTTCGTAAAGCGATTGCGAGTAAATTATCTCGGGGACGTACGGCTGCTGTTGCGCCGATTAAAGGGAAAGAATCTGATTGGGTTGAGAAGAATAATGAGAAATTTAAGGTGACGGTGAGTGGTCCTCTGCTGAATAGCGATGATGTTGATGAAGATAATGAGTCTTTCGACAGTCAGAATCTTCAATGGGCACAAGGAAAAGCAGGGGAGGATCGAGTACAAGTGTTGATATCGGAGGAACATGGTTGGGTTTTTGTGGGGATTTATGATGGATTCAATGGTCCTGATGCTACTGATTTCTTGTTATCTAATCTTTACTCTGCTGTGCATAAGGAACTCAAGGGGTTACTATGGAACGATAAGTTCGAATCTGCAGAGCCAGTCTCCGCTCATCTGAATTTAGATGAGGACATTGATCCATCCTGGGCAAACGCTCAGATGTTTGATGCTCGTTTACAGTATTTCGGTAAGGAGAATCACCCATGTGGAAATAGGAACATGAACTTGGAGGTGGACTCTAACTCAATCAAAAAGCAGGGTAAGAACAAGAAGAATAGAATTAGAGGGACAGCTAAAAAATGGGAGGAGAACCAGAGGAGATGGAAGTGTGAATGGGACAGGGAAAGATCAGAGCTTGATAGGAGATTAAAGCAACAGTCCAACCCTTCCGACCCAGATGGGGCAGCTGCTATTAACCATTCAGAGGTGTTGAAAGCACTGTCCCGGGCATTGAAAAAGACGGAGGAGTCTTATTTGGACATTGCGGACAAGATGGTAATGGAGAATCCTGAGTTATGTCTAATGGGTTCATGTGTTTTGGTGATGTTGATGAAAGGAGAAGATGTTTACTTGATGAATGTGGGTGACAGTCGAGCAGTTCTAGCTCACAAATCTGAACCTCACCTTTGGCTCAGGAAGGCTCACCAGGACTTGGAACGAATCAATGAAGAAACCTTGCATGATCTTGAATCATTCGATGGTGACCAATCTTACGGATTACCCAGTTTAGCTTCCCTTCAGCTCACCATGGATCACAGCACAAATGTGAAAGAGGAATTCGAAAGAATTAAGAATGAACATCCAGATGATGATTCTGCAGTGATAAATGACCGGGTCAAAGGTTCCTTGAAGGTCACTCGTGCTTTTGGGGCTGGCTTTCTCAAACAGCCAAAATGGAATAATGCACTACTGGAAATGTTCAAAATAGAGTATGTGGGAACCTCCCCTTACCTCTCATGTTCTCCATCACTCTACCACCACAGACTCGGCCTAAAGGATAGGTTCTTGATATTGTCTTCCGATGGACTCTACCAGTACTTCACCAATCAAGAAGCTGTTTCCCAAGTTGAGATGTTCCTTGCTTCATCTCCTGAAGGAGATCCTGCGCAACATCTCATTGAAGAAGTGCTGTTCCGAGCAGCAAAGAAAGCTAGTATGGACTTTCATGAGTTGCTAGACATCCCACAGGGAGATCGACGTCGGTACCACGATGACTTGTCCATCATCGTTATTTCTCTGGAAGGAAGGATATGGCGTTCATCTGTGTAA 2091 0.4668 MGNGFGKVGICFAGAGEVSRRHDIDMILSESLDEGLGHSFCYIRPHPCRISSSQVHTEYFQTTTFCSISGASVSANTATPLSTALLDPYSYNCNLDRASAFESSTSFASIPLQPVPRSGTPPRNTGGVPSSGPIERGFLSGPIERGLYSGPMENSGQLQRSFSNSEFGFKSKSKKRGLMRNFRKAIASKLSRGRTAAVAPIKGKESDWVEKNNEKFKVTVSGPLLNSDDVDEDNESFDSQNLQWAQGKAGEDRVQVLISEEHGWVFVGIYDGFNGPDATDFLLSNLYSAVHKELKGLLWNDKFESAEPVSAHLNLDEDIDPSWANAQMFDARLQYFGKENHPCGNRNMNLEVDSNSIKKQGKNKKNRIRGTAKKWEENQRRWKCEWDRERSELDRRLKQQSNPSDPDGAAAINHSEVLKALSRALKKTEESYLDIADKMVMENPELCLMGSCVLVMLMKGEDVYLMNVGDSRAVLAHKSEPHLWLRKAHQDLERINEETLHDLESFDGDQSYGLPSLASLQLTMDHSTNVKEEFERIKNEHPDDDSAVINDRVKGSLKVTRAFGAGFLKQPKWNNALLEMFKIEYVGTSPYLSCSPSLYHHRLGLKDRFLILSSDGLYQYFTNQEAVSQVEMFLASSPEGDPAQHLIEEVLFRAAKKASMDFHELLDIPQGDRRRYHDDLSIIVISLEGRIWRSSV* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0816 696 PANTHER PROTEIN PHOSPHATASE 2C 231 685 IPR015655 GO:0004722|GO:0006470
Vvi8g0816 696 SUPERFAMILY PP2C-like 248 688 IPR036457 -
Vvi8g0816 696 MobiDBLite consensus disorder prediction 112 134 - -
Vvi8g0816 696 CDD PP2Cc 413 687 IPR001932 -
Vvi8g0816 696 SMART PP2C_4 235 685 IPR001932 -
Vvi8g0816 696 ProSiteProfiles PPM-type phosphatase domain profile. 234 687 IPR001932 -
Vvi8g0816 696 Gene3D - 209 693 IPR036457 -
Vvi8g0816 696 MobiDBLite consensus disorder prediction 112 127 - -
Vvi8g0816 696 FunFam probable protein phosphatase 2C 4 208 692 - -
Vvi8g0816 696 Pfam Protein phosphatase 2C 416 659 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0816 Vvi-Chr8 14615718 14618089 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0816 1 696 PP2C-type Phosphatase Gene Family AT1G07630 59.141 0.0 801
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0816 - - vvi:100244361 1407.51