Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0804 ATGTCTGAGCTCGAGCTTTCGCGTTCCGAGAAGAAAAAGAAGAAGAATAAGAGCCGTACAGAAGCCCTTGATGTTGTCGAATTCGGTTCCGATCCTACTCAGAAGGACGGTGAGTTCCTAATCAAACCCCAGAGCTTCACTCCTTCGTTAGACACCTCTCAGTGGCCAATCCTTCTCAAGAACTACGACCGTCTCAATGTACGCACAGGGCACTACACTCCTCTTCCCTCCGGTTATTCCCCCCTCAAGCGTCCTCTGGCTGAGTACATCAGGTACGGCATTCTCAATCTTGATAAACCCGCTAACCCATCTTCTCACGAGGTTGTCGCTTGGATTAAGCGCATTCTCCGAGTTGAAAAAACCGGTCACAGCGGTACCCTCGATCCTAAAGTGACTGGAAATCTCATAGTGTGTATCGATCGAGCCACCCGCCTTGTGAAATCCCAGCAAGGCGCTGGAAAAGAATATGTCTGTGTTGCCCGTTTACACTCTTCAGTGCCCGATGTTGCCAAGGTGGCTCGGGCGCTTGAAACCCTAACTGGAGCGGTGTTCCAGAGGCCACCTTTGATTTCTGCTGTAAAAAGGCAACTTAGGATTAGGACGATTTATGAGAGTAAGCTTCTTGAGTACGACCCAGATAGGCATTTAGTTGTTTTTTGGATTTCTTGCGAGGCGGGAACTTATGTAAGGACATTATGTGTGCATTTGGGCCTGATTCTTGGCGTGGGAGGGCATATGCAGGAGCTTCGTAGGGTGCGGTCTGGGATTTTGGGTGAGAAAGATAACATGGTTACAATGCACGATGTTATGGATGCTCAATGGGTTTATGATAATTACAGGGATGAGAGTTATTTGAGACGGGTTATTATGCCACTTGAAGTGGTCTTAACTAGTTATAAGAGATTGGTTGTGAAGGATTCTGCTGTGAATGCGATTTGTTATGGTGCAAAATTGATGATTCCAGGGTTGTTGAGATTTGAAAATGAAATTGAGAATGGTGAGGAAGTTGTCCTTATGACTACCAAAGGAGAGGCAATTGCATTGGGCATTGCAGAGATGACAACTGCTGTAATGGCAACTTGTGATCATGGTGTTGTGGCAAGAATTAAGAGGGTGGTCATGGATCGGGATACTTACCCAAGGAAATGGGGCTTGGGACCAAGGGCAGCCATGAAGAAGAAACTGATTACTGAGGGAAAATTAAATAAACATGGGAAGCCAAATGAGAATACTCCTTCAGAATGGTTAAGGAATGTGGTTCTGCCTACAGGAGGGGATTCTATGGTTGCAAGTCTTGCAGCTGCTGTGGAACCCACTGTGAAGGCAGAGACTGATGTGAAGGAAGAGATTGATGGGGAGCAACGCAAACGAAAATTGAATGAAAGTACTGATGATCCTGTTACAGTTCCTGCTAAGAAGATTAAGAAGGAGATTGAAGAGGTGTCAGAGTTCGTCGAAACTGAAAAGAAAGAGAAGAAGAAAAAGAAGAAGAAGGAGAAGGAGAATGGTGATGCTGCCTTATCTGATGAAGAGAAAGCTGTGAAGGTGAAGATAGAGGAGGATGAAGATAAGGATGAAGCTGTCACAGTTGATAAGGAGAAGTCTGAGAAGAAGAAAAAGAAGAAGAAGAACAAGGAGGCTGAGGATGGCACCGCCTCTGGATCACCTATGGGCATTAGTGGGGGTGATGCTGAGGCTGATAAGAGTGAGAAGAAAAAGAAGAAGAAGAAAAAGAATAAAGATGCAGAAGAAGAGGACTAA 1761 0.4537 MSELELSRSEKKKKKNKSRTEALDVVEFGSDPTQKDGEFLIKPQSFTPSLDTSQWPILLKNYDRLNVRTGHYTPLPSGYSPLKRPLAEYIRYGILNLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCVARLHSSVPDVAKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKLLEYDPDRHLVVFWISCEAGTYVRTLCVHLGLILGVGGHMQELRRVRSGILGEKDNMVTMHDVMDAQWVYDNYRDESYLRRVIMPLEVVLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENEIENGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGVVARIKRVVMDRDTYPRKWGLGPRAAMKKKLITEGKLNKHGKPNENTPSEWLRNVVLPTGGDSMVASLAAAVEPTVKAETDVKEEIDGEQRKRKLNESTDDPVTVPAKKIKKEIEEVSEFVETEKKEKKKKKKKEKENGDAALSDEEKAVKVKIEEDEDKDEAVTVDKEKSEKKKKKKKNKEAEDGTASGSPMGISGGDAEADKSEKKKKKKKKNKDAEEED* 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0804 586 Pfam DKCLD (NUC011) domain 52 109 IPR012960 -
Vvi8g0804 586 ProSiteProfiles PUA domain profile. 299 374 - -
Vvi8g0804 586 SMART pua_5 300 374 IPR002478 GO:0003723
Vvi8g0804 586 MobiDBLite consensus disorder prediction 444 471 - -
Vvi8g0804 586 NCBIfam RNA-guided pseudouridylation complex pseudouridine synthase subunit Cbf5 59 384 IPR004802 GO:0006396
Vvi8g0804 586 CDD PseudoU_synth_hDyskerin 91 273 - -
Vvi8g0804 586 Gene3D PUA domain 52 383 IPR036974 GO:0003723
Vvi8g0804 586 FunFam H/ACA ribonucleoprotein complex subunit CBF5 85 291 - -
Vvi8g0804 586 SMART DKCLD_2 51 109 IPR012960 -
Vvi8g0804 586 Coils Coil 471 502 - -
Vvi8g0804 586 MobiDBLite consensus disorder prediction 1 21 - -
Vvi8g0804 586 Pfam PUA domain 300 372 IPR002478 GO:0003723
Vvi8g0804 586 Pfam TruB family pseudouridylate synthase (N terminal domain) 113 229 IPR002501 GO:0006396
Vvi8g0804 586 NCBIfam uncharacterized domain 2 295 369 IPR004521 GO:0003723
Vvi8g0804 586 Coils Coil 530 550 - -
Vvi8g0804 586 MobiDBLite consensus disorder prediction 483 586 - -
Vvi8g0804 586 Gene3D Pseudouridine synthase 85 291 - -
Vvi8g0804 586 Pfam tRNA pseudouridylate synthase B C-terminal domain 230 296 IPR032819 -
Vvi8g0804 586 MobiDBLite consensus disorder prediction 483 535 - -
Vvi8g0804 586 CDD PUA_Cbf5 298 372 - -
Vvi8g0804 586 SUPERFAMILY Pseudouridine synthase 52 297 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vvi8g0804 586 SUPERFAMILY PUA domain-like 299 380 IPR015947 -
Vvi8g0804 586 Coils Coil 565 586 - -
Vvi8g0804 586 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 11 501 IPR004802 GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0804 Vvi-Chr8 14562043 14563803 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0804 1 475 NAC Transcription Factor Family AT3G57150 80.632 0.0 750
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0804 K11131 - vvi:100258019 994.571