Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0802 ATGATGAGTGATAGACACCTGGGAGATATTCTTGGGGGCTTTGATCATAACCATACAGGCAAACAGAGCCCTTTCTCAGTTTCATCAAGCTACGACCATACTGCAACTGCTAGTGAGAATACACCAGGAGTGAACCATTTGGCTACTGATCATGAGAATAACAGCACTCCTCTATATGACAGTGCAGCAAAGAAAAAGAGAGTATCAAGAATCATCGGTGGGGGGCTGCGGCAGTTCAGTATCATAGTTTGTAAGAAGGTGGAGAACAAGAGGACAACCACATATAGTGAGGTTGCAGATGAAATTATAGCAGAGTTTGCTGCAGCACACAGTAAAACAGCAGTATCTCTGGATGAGTTTGATGAGAAGAATATCCGGCGACGGGTTTATGATGCATTGAATGTCCTTATGGCACTGGATATCATCACTAGAGACAAAAAGGAAATCAGGTGGAAGGGACTTCCAACTGCAGATTGGAAGGATATAGAAGAGGTCAAGGCACTACGTGTGAAGCTTATGACTAGGATGGAAAAGAAAACTGCCTACTTGAAAGATTTAGAAGATCAAATTGTAGGTCTCCAGAATCTGATGCTACGAAACCAGCAGTTGCTTAAGTCTGGAAATGTTCCTTCAGAAGGATTTCCTTTGCCATTTATATTGGTTCAAACAAGTCCTCATGCTACAGTTGAGATTGAGATTTCTGAGGACATGCAGCTGGTGCACTTTGACTTCAACAGTACACCCTTTTCCTTGCATGATGATGCTTACATTCTTAAGTTAATGCGGTGCTACCAACTGCCAGCTGAGAGTAGACATGTTTCTCAGAGTTCTTCAGTTCACTCAACTTCAAGCTCCGACATTGCATCTGGAAGCACCAAGCCCTTCTACTGGAACTCTGAGATGGACACACTGAAATGA 918 0.4303 MMSDRHLGDILGGFDHNHTGKQSPFSVSSSYDHTATASENTPGVNHLATDHENNSTPLYDSAAKKKRVSRIIGGGLRQFSIIVCKKVENKRTTTYSEVADEIIAEFAAAHSKTAVSLDEFDEKNIRRRVYDALNVLMALDIITRDKKEIRWKGLPTADWKDIEEVKALRVKLMTRMEKKTAYLKDLEDQIVGLQNLMLRNQQLLKSGNVPSEGFPLPFILVQTSPHATVEIEISEDMQLVHFDFNSTPFSLHDDAYILKLMRCYQLPAESRHVSQSSSVHSTSSSDIASGSTKPFYWNSEMDTLK* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0802 305 PANTHER TRANSCRIPTION FACTOR DP 30 281 IPR015648 GO:0005667|GO:0051726
Vvi8g0802 305 SMART DP_2 160 294 IPR014889 -
Vvi8g0802 305 Gene3D - 64 158 IPR036388 -
Vvi8g0802 305 MobiDBLite consensus disorder prediction 13 58 - -
Vvi8g0802 305 Gene3D Transcription factor DP 159 293 IPR038168 -
Vvi8g0802 305 MobiDBLite consensus disorder prediction 19 58 - -
Vvi8g0802 305 Pfam Transcription factor DP 161 267 IPR014889 -
Vvi8g0802 305 SUPERFAMILY E2F-DP heterodimerization region 159 299 IPR037241 -
Vvi8g0802 305 FunFam Transcription factor-like protein DPB 159 283 - -
Vvi8g0802 305 Coils Coil 176 203 - -
Vvi8g0802 305 FunFam Transcription factor-like protein DPB 66 158 - -
Vvi8g0802 305 Pfam E2F/DP family winged-helix DNA-binding domain 75 153 IPR003316 GO:0005667|GO:0006355
Vvi8g0802 305 CDD DP_DD 160 261 IPR014889 -
Vvi8g0802 305 SMART E2F_TDP_2 71 153 IPR003316 GO:0005667|GO:0006355
Vvi8g0802 305 SUPERFAMILY "Winged helix" DNA-binding domain 74 154 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0802 Vvi-Chr8 14544085 14548260 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0802 33 299 E2F-DP Transcription Factor Family AT5G02470 53.597 1.77e-93 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Vvi8g0802 DP 2.7e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0802 K04683 - vvi:100240899 577.4