Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0792 ATGGCGACGAGAGCAGGGCTTTTGAAGCGATTTTTTTCAACGTCAATGTTCTCTTCGCAAACCACGGCTGCTGCTAATGCTAAACCTGCACCTATTCCTTCAACCACCCTCTTCATCTCTGGGCTCAACAAGAGAACTACATCTGAGAAACTGAATGAAGAGGCCTCCAAATTTGGTGAAGTCGTTCATGCCAGGGTTGTGACAGACCGTTCCTCTGGATATTCAAAAGGTTTTGGATTTGTGAAATATGCCACTATAGCTCAAGCAGAGCAAGGAATAAAGGGATTGGATGCTCAGTTTCTTGATGGATGGGTAATTTTTGCTGAATTCGCGCGTTCAAGAACTCCCCCAGGATACTTGGCATCCACAGAAAAGAACACCCATCAGGCTGAAATGGATTGA 402 0.4527 MATRAGLLKRFFSTSMFSSQTTAAANAKPAPIPSTTLFISGLNKRTTSEKLNEEASKFGEVVHARVVTDRSSGYSKGFGFVKYATIAQAEQGIKGLDAQFLDGWVIFAEFARSRTPPGYLASTEKNTHQAEMD* 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0792 133 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 113 IPR000504 GO:0003723
Vvi8g0792 133 PANTHER NUCLEOLAR PROTEIN 8 17 118 - -
Vvi8g0792 133 SMART rrm1_1 36 109 IPR000504 GO:0003723
Vvi8g0792 133 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 37 103 IPR000504 GO:0003723
Vvi8g0792 133 Gene3D - 13 118 IPR012677 -
Vvi8g0792 133 FunFam RNA recognition motif-containing protein 14 128 - -
Vvi8g0792 133 SUPERFAMILY RNA-binding domain, RBD 25 118 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0792 Vvi-Chr8 14455174 14457881 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0792 34 114 Eukaryotic Initiation Factors Gene Family AT4G34110 30.864 3.18e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0792 - - vvi:100254516 258.07