Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0790 ATGGCTTCGGACTCTGATCCAAGCATCAACAGCAACGATTCATCATCTTATTTTCAACAAACAGTTTGTTTGCAAGATTGGTGGCTGATCAAGTCCAAGAAGGGCTTCGAAGGGAAACGACTAGCGGTTGCGGGGTTGTCCTCAAAGGAGCAACGAGCTGTGCGAGTGTTTTCATCTGCACCAATTATCAAGAGATATGATGTATTCACTCTTGAGACTGCTGATGGAATAACTGTCATTATCAAGGGCTTCATAAACAAGTTACGTACAAATGAAAATGGGTTTCCCTCTGAGGTGTTCAATCATTTCTTGTTTGGTTTTCCTCCTCACTGGGAGGAATATGCTGAAAAGTGCTTTGAGGGAGGCTCTACCAGTGGGTTTGTTTCAAGAAGTAACCCTGGCGTTGTTTCAATAAGTACCCATGACCTAGACAAGTTAATGATGGACTCAGAAAAAACAAACCAGTGCAAGAAGGCCATTAATGAAGCAAGACATGAAAACAGTGAAGATGTTGTGGAAATGAAGCGTAAAAATAATGAGCGGAGTTCTCCATTTGAAGCCTGTGAGAACCAAGATGTAGGGAATTTGAACAGAAGTTCATTGACTGCAAGTGCTCAATCTGGGAAAAAAATGGACATCTCGGAGGATATTCCCTGTCAATCAGAGGGCCAAGTATCAAAATGTCAGTCAAGGAAGTCAAACAGAAAATGGCAGGAAGGACAAAAGGCTGAAATTGGGTTGAAAACTAAAAGAAAAAGCTTCATTTCCGTTCCAGTGGGTTTTGATCATGTAAACAACACTGTAGGAAATATTAGCCGTGAAATAGGAGGAGAAAGTATCTCGAATTTGTCTGATGTTGGACCTCAAGAGCATCATAATATAACAGTAGAAAAACTAGATGATGAGTGTTTAAAAGATGGTTCTCAGAAGAATTCTGAGTTCCCTCCTGCTTATACTAATGCAAAATGCAAACAAAACCATGAAAACATTATGATTCAAGCCAAAATACAGAGTAAGAACACAAATGAATCAGTCAGACCTTCCACTAGGCCCGGTCAGGCAAACCAAAAAATCGACCTGAAAACCCCAGTTGGGGAGAGAGCAAGCAGTTCTGGAAAGAAGACTAAGAGGAAATTAGATTACAATATACAGGTAACGCATCCTAGCATCAAAGAGAGAACAGAAGTGTCAATTGTTTCTCCAGAATTATTGAGTTTGAAACGATCCAGATCAGGAAGACTACTTTTACCTTCCCTAGATTTCTGGCGCAACCAAAAGGCAGTTTATGATGCGGATCGGAGAATTACTGGAATTCAGGAAGTCCTGCATGTGGTAGAACCATCTAGAGCTAATAGGCCTCTTCACCTTGTTGGTAGGGAGTAG 1383 0.41 MASDSDPSINSNDSSSYFQQTVCLQDWWLIKSKKGFEGKRLAVAGLSSKEQRAVRVFSSAPIIKRYDVFTLETADGITVIIKGFINKLRTNENGFPSEVFNHFLFGFPPHWEEYAEKCFEGGSTSGFVSRSNPGVVSISTHDLDKLMMDSEKTNQCKKAINEARHENSEDVVEMKRKNNERSSPFEACENQDVGNLNRSSLTASAQSGKKMDISEDIPCQSEGQVSKCQSRKSNRKWQEGQKAEIGLKTKRKSFISVPVGFDHVNNTVGNISREIGGESISNLSDVGPQEHHNITVEKLDDECLKDGSQKNSEFPPAYTNAKCKQNHENIMIQAKIQSKNTNESVRPSTRPGQANQKIDLKTPVGERASSSGKKTKRKLDYNIQVTHPSIKERTEVSIVSPELLSLKRSRSGRLLLPSLDFWRNQKAVYDADRRITGIQEVLHVVEPSRANRPLHLVGRE* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0790 460 MobiDBLite consensus disorder prediction 337 356 - -
Vvi8g0790 460 MobiDBLite consensus disorder prediction 164 183 - -
Vvi8g0790 460 MobiDBLite consensus disorder prediction 164 185 - -
Vvi8g0790 460 Pfam SANTA (SANT Associated) 22 114 IPR015216 -
Vvi8g0790 460 PANTHER KINETOCHORE-ASSOCIATED PROTEIN KNL-2 HOMOLOG 7 440 - -
Vvi8g0790 460 MobiDBLite consensus disorder prediction 215 240 - -
Vvi8g0790 460 MobiDBLite consensus disorder prediction 337 377 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0790 Vvi-Chr8 14440189 14447330 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vvi8g0790 SANTA 1.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0790 - - vvi:100854566 872.463