Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0786 ATGGCGGCATCGCGGCGGCTCCGGGACCTCCAATCGCAACCGGCGAACAAGATCTGCGTTGATTGCTCACAGAAAAATCCTCAGTGGGCATCGGTTTCGTATGGCATCTTCATGTGCTTGGAGTGCTCCGGCAAGCACCGCGGACTCGGTGTTCATATCAGCTTCGTCCGATCTGTGACCATGGACTCGTGGTCAGAGATCCAGGTCAAGAAGATGGAATCCGGCGGCAACGAACGGCTTAATTCGTTTCTCGCGCAGTACGGGATTAAAAAAGAGACGGATATCGTCACCAAGTATAACACCAAAGCTGCCAGCATTTATCGGGATCGAATCCAAGCCCTAGCGGAAGGGCGGCCATGGAGGGATCCTCCGGTTGTGAAGGAGACCATTGGCGCTGGCAAAAGCAAGCCTCCACTAGGGCAAAGTGCTGGTAATGGCGGTAGGGATGGTGGTTTTGGTGACAATGGGGGTTGGGATAGTTGGGACAATGACGATGGATTTAGATCCACGGACATGAGGCGAAATCAATCGACTGGTGATGTTAGGGGAGGAAGCGGAAGCGGCGGACGAGGCTTCCCGGCGAGGTCTCGGTCGACGGAGGATATGTATACGAGGACAGAATTGGAGGCTTCTGCGGCCAATAAAGGGGACTTTTTTGCGCGGAAGTTGGCCGAGAATGAATCTAGGCCAGAAGGAATACCCCCTTCGCAAGGAGGGAAATATGTAGGGTTCGGATCCACTCCGCCTCCGCCACAGATGAATGCGCAAGGGGACGTTCTCAAGGACACTGTGTCTGTTGTCTCTCAGGGGCTGGGTAGGTTAACTTTGGTTGCTACCTCTGCGGCACAGTCTGCTGCCAATGCTGTCCAAGCGGGCACAAAAGAGCTCAGTTCCAAGGTGAGGGATGGTGGTTATGATTATAAAGTGAACGAGACTGTCAATGTTGTTACCACAAAAACAACAGAGATTGGTCATAAAACATGGGGTATCATGAAGGGGGTCATGGCAATGGCTTCACAGAAGGTTGAGGAGTATGCTAAAGATGGAATGAAATGGAACAGTGATGGCTGGCAGCGGAATGATAATGAGAAAAATGGTTTCTATCAGGAGTTTGGTCAGCAATCCAAAGGATGGAACTCATCTTCTGAGGGAGGGCAGCCGTCATCCGGTGGGCACGTCAATTCTGTTAGCTCAAGCTCATGGGATGATTGGGACCAAAAAGACAATAAGAAGGAAGACTCCACAAAGGGGGCATCTCATAATGGAGACAACTGGGCTGGCTGGGACGACGCCAAAGATGATGGATATGAAAATTTCTACCAGAGTGCATCTGATAAGAAAGCTGTTGGTCGCAATGGGAAATCTGATACCATGTGGACAGAGGGAGGTTTTCTCTAA 1398 0.5122 MAASRRLRDLQSQPANKICVDCSQKNPQWASVSYGIFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQVKKMESGGNERLNSFLAQYGIKKETDIVTKYNTKAASIYRDRIQALAEGRPWRDPPVVKETIGAGKSKPPLGQSAGNGGRDGGFGDNGGWDSWDNDDGFRSTDMRRNQSTGDVRGGSGSGGRGFPARSRSTEDMYTRTELEASAANKGDFFARKLAENESRPEGIPPSQGGKYVGFGSTPPPPQMNAQGDVLKDTVSVVSQGLGRLTLVATSAAQSAANAVQAGTKELSSKVRDGGYDYKVNETVNVVTTKTTEIGHKTWGIMKGVMAMASQKVEEYAKDGMKWNSDGWQRNDNEKNGFYQEFGQQSKGWNSSSEGGQPSSGGHVNSVSSSSWDDWDQKDNKKEDSTKGASHNGDNWAGWDDAKDDGYENFYQSASDKKAVGRNGKSDTMWTEGGFL* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0786 465 MobiDBLite consensus disorder prediction 122 200 - -
Vvi8g0786 465 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 464 IPR044519 GO:0005096|GO:0016192
Vvi8g0786 465 MobiDBLite consensus disorder prediction 373 402 - -
Vvi8g0786 465 FunFam ADP-ribosylation factor GTPase-activating protein 1 129 - -
Vvi8g0786 465 MobiDBLite consensus disorder prediction 403 418 - -
Vvi8g0786 465 SMART arf_gap_3 1 120 IPR001164 GO:0005096
Vvi8g0786 465 CDD ArfGap_ArfGap1 3 117 - -
Vvi8g0786 465 MobiDBLite consensus disorder prediction 373 465 - -
Vvi8g0786 465 SUPERFAMILY ArfGap/RecO-like zinc finger 5 106 IPR037278 -
Vvi8g0786 465 Gene3D Arf GTPase activating protein 1 125 IPR038508 -
Vvi8g0786 465 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096
Vvi8g0786 465 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096
Vvi8g0786 465 PRINTS HIV Rev interacting protein signature 56 77 IPR001164 GO:0005096
Vvi8g0786 465 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 120 IPR001164 GO:0005096
Vvi8g0786 465 Pfam Putative GTPase activating protein for Arf 5 94 IPR001164 GO:0005096
Vvi8g0786 465 MobiDBLite consensus disorder prediction 426 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0786 Vvi-Chr8 14388541 14398080 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0786 5 87 C2H2 Transcription Factor Family AT4G05330 51.190 3.25e-23 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0786 K12492 - vvi:100251169 858.981