Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0779 ATGCAGTTTCAAAATTCCGGTGTTTATCGATTTGCAGTTCGGAAAGGAGTTGTTTGGATGGGAGAAGGGGAAGGTTGTTTGCCAGTGGTTAAGGATATCAAAGTGTTAAAGGATGGAAAAACGGAAAGTGAAAATTCTTCTAGAATGGAATTGAAGCGGGACCATGAATGTATTGCTGGCAATATCGAAACGGAGGCTTCTCCTAGGAAGAAGCCAGTGAAAGAAGCTTTGAATGAGGAAGGATGCTCAGAAGTTTCAAATCCGATTCTTTCTCCAAAATATAATGCTTCTAGCGTTCAAACTATTACGAGTCAGGTGGCTGAGTTAGCAAGCACTAACCAAGCGGTGTTAGGTGAAATCACGTCTACAAGTTCAGGAAATTCAGTTCCAGAGAGTTTGAGTGATGAAGAGCATAGCAGAAATGGTTCATCTGATGGAGTCTCAACAACTCAGGTTGTACTGGAAATTCCGAAGCATGTCAGCTCTACTGGAATCAGGAAAATTACATTCAAGTTTAGCAAGAGCAAGGAGGCTTATAATAGTAAGCTATCTTCAGAACCTCTGCATGTGCTTGGTAGGGTTGGTAATTCCCATTCATATATAGGCTACCCCGGTGATCCTGGACGAAACATTGCATCACCTGATACAGGAACAAATATGCGTGTAAATACATGTTGGAATCTGGAAACCAGAAATCTTCATTTTCGTGCTCCTAATATGGAATTGAAAATGTCGAAGAAGGTTGTCCCAAAGAGCTACCCTACAAATGTTAAAAAGTTATTATCAACTGGTATTCTTGATGGGGCTCTGGTAAAATATATTTCTACTTCACGGGAGAAAGAGCTGCAGGGAGTTATAAGAGAAAGTGGATATTTGTGTGGCTGTTCAGCATGCAATTTCACCAAAGTTCTTACTGCCTATGAGTTTGAGCAGCATGCTGGTGGTAGAACTAGACACCCAAATAATCACATATACCTGGAGAATGGCAAGCCAATTTATAGTATCATTCAACAGCTTAAGACCGCCCCACTCAGTGATCTGGATGAAGTGATAAAAAATATTGCAGGTTCATCCGTCAATATGGAATGCTTCAAGGCTTGGAAAGCAAGTTTTCATCAAAACAATGGAGTGACCGAAGCAGATGAAAATTATCATGCTCAGCTCCTTAACCATCCCCAATCAATTGTAAGCTTTCCTGTTCAAGCCGTTGAAGACAGCTTTACTGGTTCGAGGTTACCTTTGAAACAAAAAGAACTTATGAAGGAGATGACACAAGAGCGGAAACATGCAGCAAAGAAGCCAAGCTCCTATATTTATGGCTCAGGTCTTCAACACAAGAAATCAAGTGAAGGAGCCATTAAGAAAAGGGATAATGATCTACATCGGTTACTTTTCATGCCAAATGGACTCCCTGATGGGGCTGAATTAGCATACTATGTCAAAGGCCAGAGAATACTTGGGGGTTACAAGCAGGGCAATGGTATAGTCTGCAGTCACTGTGACAGTGAGGTCAGCCCTTCTCAGTTTGAAGCTCATGCTGGATGGGCTGCTAGGCGTCAACCCTATCGCCATATCTATACTTCTAATGGATTGACGCTTCATGATATAGCTATATCATTGGCAAATGGTCAAAACTGTACCACTGGCGACAGTGATGATATGTGTACCTTATGTGGAGATGGAGGGGACCTGATTCTTTGTGATGGTTGTCCTCGGGCTTTTCATCCAGCTTGTTTAGAATTGCAGTGTCTCCCTGAAGGGGATTGGCGCTGTCCATGTTGTGTTGAAAATTTTTGTCCTGATAGAAAAGTTGCAAGACCAATTAGAATACAGTTGACCAGGGCTGTTAAAGCACCAGAATCTGAAATTGGTGGTTGTGTTGTTTGCAGGGCCCATGACTTCAGTGTCTCTAAATTTGATGATCGAACGGTTATGCTTTGTGACCAATGTGAAAAGGAATTCCATGTTGGTTGCTTGCGAGATAGTGGGTTGTGTGATTTAAAAGAACTCCCCAAGGATAAATGGTTCTGCTGTGATGACTGCAGTAGGGTCCATGTGGCTCTACAAAACTTGGCTTCCAGGGGACCAGAGATGATTCCAGCTTCAGTATCAAGCATGATAAACAGGAAGAATCTGGAAAAAGGCTTAATTGATGGAGCTGCTGATGATATTCAGTGGTGCATTTTAAGTGGAAAAAGTTGCTACAAAGAACATTTGCCGTTGCTTTCCAGGACTACTGCAATTTTTAGAGAATGTTTTGATCCCATAGTTGCAAGCTCTGGTCGGGATCTAATTCCTGTTATGGTGTACGGGAGAAACATATCTGGACAAGAGTTCGGTGGAATGTATTGTGTCGTTTTACTTGCAAAGTCCACTGTTGTATCTGCTGGACTTATCAGGGTTTTTGGTCAGGAGGTAGCTGAGCTACCTATAGTGGCCACAAGTAAAGAACATCAAGGAAAAGGTTTTTTCCGAGCACTATTCTCATGCATTGAGGAATTGCTGAGTTCCTTGGGTGTGAAAACCCTGGTGCTTCCTGCAGCTGAGGAAGCTGAAGCAATCTGGACGAATAAATTAGGCTTCCAAAAGATGTCTGAGGAGCGGATGTTAAAGTATACGAGGGAACTTCAGCTGACAATTTTCAAGGGAACATCAATGCTAGAGAAGGAAGTGCCATGTATTGTGGAATAA 2691 0.4221 MQFQNSGVYRFAVRKGVVWMGEGEGCLPVVKDIKVLKDGKTESENSSRMELKRDHECIAGNIETEASPRKKPVKEALNEEGCSEVSNPILSPKYNASSVQTITSQVAELASTNQAVLGEITSTSSGNSVPESLSDEEHSRNGSSDGVSTTQVVLEIPKHVSSTGIRKITFKFSKSKEAYNSKLSSEPLHVLGRVGNSHSYIGYPGDPGRNIASPDTGTNMRVNTCWNLETRNLHFRAPNMELKMSKKVVPKSYPTNVKKLLSTGILDGALVKYISTSREKELQGVIRESGYLCGCSACNFTKVLTAYEFEQHAGGRTRHPNNHIYLENGKPIYSIIQQLKTAPLSDLDEVIKNIAGSSVNMECFKAWKASFHQNNGVTEADENYHAQLLNHPQSIVSFPVQAVEDSFTGSRLPLKQKELMKEMTQERKHAAKKPSSYIYGSGLQHKKSSEGAIKKRDNDLHRLLFMPNGLPDGAELAYYVKGQRILGGYKQGNGIVCSHCDSEVSPSQFEAHAGWAARRQPYRHIYTSNGLTLHDIAISLANGQNCTTGDSDDMCTLCGDGGDLILCDGCPRAFHPACLELQCLPEGDWRCPCCVENFCPDRKVARPIRIQLTRAVKAPESEIGGCVVCRAHDFSVSKFDDRTVMLCDQCEKEFHVGCLRDSGLCDLKELPKDKWFCCDDCSRVHVALQNLASRGPEMIPASVSSMINRKNLEKGLIDGAADDIQWCILSGKSCYKEHLPLLSRTTAIFRECFDPIVASSGRDLIPVMVYGRNISGQEFGGMYCVVLLAKSTVVSAGLIRVFGQEVAELPIVATSKEHQGKGFFRALFSCIEELLSSLGVKTLVLPAAEEAEAIWTNKLGFQKMSEERMLKYTRELQLTIFKGTSMLEKEVPCIVE* 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0779 896 CDD NAT_SF 784 845 - -
Vvi8g0779 896 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 730 883 IPR000182 GO:0016747
Vvi8g0779 896 SMART PHD_3 554 595 IPR001965 -
Vvi8g0779 896 SMART PHD_3 625 682 IPR001965 -
Vvi8g0779 896 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain-containing protein 542 618 - -
Vvi8g0779 896 Pfam Tify domain binding domain 488 537 IPR032308 -
Vvi8g0779 896 Pfam Tify domain binding domain 284 338 IPR032308 -
Vvi8g0779 896 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 542 618 IPR013083 -
Vvi8g0779 896 ProSitePatterns Zinc finger PHD-type signature. 555 594 IPR019786 -
Vvi8g0779 896 Gene3D - 772 877 - -
Vvi8g0779 896 CDD PHD1_AIRE 554 594 - -
Vvi8g0779 896 SUPERFAMILY FYVE/PHD zinc finger 550 601 IPR011011 -
Vvi8g0779 896 MobiDBLite consensus disorder prediction 121 148 - -
Vvi8g0779 896 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 624 684 IPR013083 -
Vvi8g0779 896 ProSiteProfiles Zinc finger PHD-type profile. 623 684 IPR019787 -
Vvi8g0779 896 PANTHER AUTOIMMUNE REGULATOR 40 891 - -
Vvi8g0779 896 SUPERFAMILY FYVE/PHD zinc finger 624 679 IPR011011 -
Vvi8g0779 896 ProSitePatterns Zinc finger PHD-type signature. 626 681 IPR019786 -
Vvi8g0779 896 FunFam PHD zinc finger protein 624 684 - -
Vvi8g0779 896 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 778 873 IPR016181 -
Vvi8g0779 896 ProSiteProfiles Zinc finger PHD-type profile. 552 597 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0779 Vvi-Chr8 14306298 14323658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0779 44 896 PHD Transcription Factor Family AT3G53680 55.278 0.0 916
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0779 - - vvi:100246491 1806.57