Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0778 ATGCTGAGTTTTCGTCGCGTCCTCACCGGATCTTCCACAATTCTCCAATCTCAGTTTTCTCCGGCTCGCTTTAATTCAACCGTCACATCACCAAAGCTCTTCGTCAGCGGCCTTTCGAGATTAACAACAGATGAAAAGCTAAAAGAAGCATTTTCTCCTTTTGGCCAGCTTCTTGAAGCAAAGGTCATAACTGATAGAGTCTCTGGAAGATCAAAGGGTTTTGGCTTTGTTACATACACCACCTTAGAAGAAGCTGAGAAAGCCAGAGAAGGAATGAACGCTAAGTTCTTAGATGGGTGGGTTATTTTTGTTGATCCTGCTAAACCAAGGGAGCCTCGACCTCCACCTCAACAAGAGCCGGAGTCTTCTGAAACTGGTTTCAGAACAAACAAGACAATTGGATGGTGTGGGTGA 414 0.4493 MLSFRRVLTGSSTILQSQFSPARFNSTVTSPKLFVSGLSRLTTDEKLKEAFSPFGQLLEAKVITDRVSGRSKGFGFVTYTTLEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPPQQEPESSETGFRTNKTIGWCG* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0778 137 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 33 99 IPR000504 GO:0003723
Vvi8g0778 137 Gene3D - 16 133 IPR012677 -
Vvi8g0778 137 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 31 109 IPR000504 GO:0003723
Vvi8g0778 137 PANTHER NUCLEOLAR PROTEIN 8 21 136 - -
Vvi8g0778 137 SMART rrm1_1 32 105 IPR000504 GO:0003723
Vvi8g0778 137 MobiDBLite consensus disorder prediction 106 137 - -
Vvi8g0778 137 FunFam RNA binding protein 18 131 - -
Vvi8g0778 137 SUPERFAMILY RNA-binding domain, RBD 29 130 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0778 Vvi-Chr8 14294382 14298182 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0778 33 119 Eukaryotic Initiation Factors Gene Family AT3G16380 37.931 5.99e-14 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0778 - - vvi:100258495 245.743