Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi8g0778 | ATGCTGAGTTTTCGTCGCGTCCTCACCGGATCTTCCACAATTCTCCAATCTCAGTTTTCTCCGGCTCGCTTTAATTCAACCGTCACATCACCAAAGCTCTTCGTCAGCGGCCTTTCGAGATTAACAACAGATGAAAAGCTAAAAGAAGCATTTTCTCCTTTTGGCCAGCTTCTTGAAGCAAAGGTCATAACTGATAGAGTCTCTGGAAGATCAAAGGGTTTTGGCTTTGTTACATACACCACCTTAGAAGAAGCTGAGAAAGCCAGAGAAGGAATGAACGCTAAGTTCTTAGATGGGTGGGTTATTTTTGTTGATCCTGCTAAACCAAGGGAGCCTCGACCTCCACCTCAACAAGAGCCGGAGTCTTCTGAAACTGGTTTCAGAACAAACAAGACAATTGGATGGTGTGGGTGA | 414 | 0.4493 | MLSFRRVLTGSSTILQSQFSPARFNSTVTSPKLFVSGLSRLTTDEKLKEAFSPFGQLLEAKVITDRVSGRSKGFGFVTYTTLEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPPQQEPESSETGFRTNKTIGWCG* | 138 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi8g0778 | 137 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 33 | 99 | IPR000504 | GO:0003723 | |
Vvi8g0778 | 137 | Gene3D | - | 16 | 133 | IPR012677 | - | |
Vvi8g0778 | 137 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 31 | 109 | IPR000504 | GO:0003723 | |
Vvi8g0778 | 137 | PANTHER | NUCLEOLAR PROTEIN 8 | 21 | 136 | - | - | |
Vvi8g0778 | 137 | SMART | rrm1_1 | 32 | 105 | IPR000504 | GO:0003723 | |
Vvi8g0778 | 137 | MobiDBLite | consensus disorder prediction | 106 | 137 | - | - | |
Vvi8g0778 | 137 | FunFam | RNA binding protein | 18 | 131 | - | - | |
Vvi8g0778 | 137 | SUPERFAMILY | RNA-binding domain, RBD | 29 | 130 | IPR035979 | GO:0003676 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi8g0778 | Vvi-Chr8 | 14294382 | 14298182 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi8g0778 | 33 | 119 | Eukaryotic Initiation Factors Gene Family | AT3G16380 | 37.931 | 5.99e-14 | 65.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi8g0778 | - | - | vvi:100258495 | 245.743 |