Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0771 ATGGCCGACGCTGCTGCGAGCCCCGGCGAAGGTAGTCACGAGAGCGGCGAGCAGATCCCCCACTCGAACGTGCGCGAGCAAGATCGGTTTCTTCCGATCGCGAATATTAGCCGGATCATGAAGAAGGCGCTTCCCGCGAATGGAAAGATCGCTAAGGATGCGAAAGAGATCATGCAAGAATGCGTCTCGGAGTTCATCAGTTTCATCACTAGCGAGGCGAGTGATAAATGTCAGAGAGAGAAGAGGAAGACTATTAATGGGGATGATTTGCTCTGGGCAATGGCGACTTTAGGGTTTGAGGATTATATTGATCCGCTGAAGTTGTACTTGGCTGCATACAGAGAGGTAATATGTCTTTGA 360 0.5056 MADAAASPGEGSHESGEQIPHSNVREQDRFLPIANISRIMKKALPANGKIAKDAKEIMQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKLYLAAYREVICL* 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0771 119 MobiDBLite consensus disorder prediction 1 26 - -
Vvi8g0771 119 SUPERFAMILY Histone-fold 27 116 IPR009072 GO:0046982
Vvi8g0771 119 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Vvi8g0771 119 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Vvi8g0771 119 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Vvi8g0771 119 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Vvi8g0771 119 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 17 115 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vvi8g0771 119 Gene3D Histone, subunit A 17 117 IPR009072 GO:0046982
Vvi8g0771 119 FunFam Nuclear transcription factor Y subunit B-3 20 118 - -
Vvi8g0771 119 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0771 Vvi-Chr8 14202734 14203179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0771 5 116 CCAAT-HAP3 Transcription Factor Family AT2G37060 83.478 2.44e-65 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vvi8g0771 CBFD_NFYB_HMF 2e-28 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0771 K08065 - vvi:100265391 232.261