Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0767 ATGAACTCCAGCTCTTCCAACCCTAAACCCATGGCCTCGTTAACTTCTGGTGATGGCTCAGGCAAGAAGGTCAGGAAACCCTACACCATAACCAAGTCCAGAGAGAGCTGGACCGAGGAAGAGCACGACAAATTTCTCGAAGCACTTCAACTATTTGACCGTGACTGGAAAAAAATTGAAGATTTTGTTGGTTCAAAGACAGTGATTCAGATTAGGAGTCATGCCCAGAAATACTTTTTAAAGGTCCAAAAGAATGGGACAGTAGCACATGTGCCACCGCCTCGCCCAAAGCGCAAAGCTATTCATCCTTACCCACAAAAGGCACCAACAAATGTTTTAGTGCCATTGCAAGCTTCTGTGGCATATCCTTCTTCATTGCATTCCCTTGTGCCTGTATATTCTCCATGGGATGAGACTTCCATGCTTATAAACACTGCAACAAGTGGAATCGCTCCACCCCAAGATGAATACAGTCTTCACATGGTTGAAGCTGATATTGGATCAAAGGGGGTGGCAAAGATTAGTAACAGTGATGTTTGTGGCATTGGAAGGTCAAGCAGAACACTGCCAAGCTCTGAGTTACAGAAGCAAAGAAAACAAGGTTCTGCACTTCATGGTATACCAGATTTTTCTGAAGTGTACACCTTTATTGGCAGTGTCTTTGATCCAGACTCTGAGGGTCAAATAGAGAAGCTCAAGGAGATGGATCCCATTAATTTTGAAACTTGGCAGACGGGTGAGTAA 744 0.4422 MNSSSSNPKPMASLTSGDGSGKKVRKPYTITKSRESWTEEEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVQKNGTVAHVPPPRPKRKAIHPYPQKAPTNVLVPLQASVAYPSSLHSLVPVYSPWDETSMLINTATSGIAPPQDEYSLHMVEADIGSKGVAKISNSDVCGIGRSSRTLPSSELQKQRKQGSALHGIPDFSEVYTFIGSVFDPDSEGQIEKLKEMDPINFETWQTGE* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0767 247 Gene3D - 37 84 - -
Vvi8g0767 247 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 83 IPR017930 -
Vvi8g0767 247 SMART sant 33 81 IPR001005 -
Vvi8g0767 247 MobiDBLite consensus disorder prediction 1 37 - -
Vvi8g0767 247 SUPERFAMILY Homeodomain-like 28 84 IPR009057 -
Vvi8g0767 247 FunFam protein REVEILLE 6 isoform X1 36 84 - -
Vvi8g0767 247 NCBIfam myb-like DNA-binding domain, SHAQKYF class 32 81 IPR006447 GO:0003677
Vvi8g0767 247 PANTHER SWI/SNF COMPLEX-RELATED 17 242 - -
Vvi8g0767 247 ProSiteProfiles SANT domain profile. 32 85 IPR017884 -
Vvi8g0767 247 CDD SANT 36 79 IPR001005 -
Vvi8g0767 247 Pfam Myb-like DNA-binding domain 34 79 IPR001005 -
Vvi8g0767 247 ProSiteProfiles Myb-like domain profile. 29 79 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0767 Vvi-Chr8 14151149 14165459 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vvi8g0767 Myb_DNA-binding 3.3e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0767 - - vvi:100249962 490.345