Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0765 ATGGCCGCCGCCGCCGCCCGTCCTCTCGTCACAGTTCAAGTCCTAAAGTCTGATATGGCCACCGACGGCGGAAACGCCGTCCCTCTCCCTGATGTTATGAAAGCCTCCATCCGTCCTGACATCGTCACCTTTGTCCACTCCAACATCTCCAAAAACAGCCGCCAGCCCTACGCCGTTAGTCGTCGCGCCGGTCACCAGACCTCCGCTGAGTCCTGGGGTACTGGCCGCGCTGTTTCCCGTATCCCTCGTGTGCCAGGTGGTGGTACTCACCGTGCTGGCCAGGGTGCCTTCGGAAACATGTGCCGTGGCGGTCGAATGTTCGCCCCCACCAAGATCTGGCGCCGCTGGCACCGCAAGATTAACGTCAACCAGAAGCGCTATGCCGTGGTCTCCGCGATCGCCGCTTCGGCTATCCCTTCTCTAGTCATGGCTCGCGGCCACCGGATCGAATCGGTCCCCGAGCTTCCCCTGGTGATCGGTGATTCAGCCGAGAGCGTTGAGAAAACATCGGCGGCGATTGATATTCTGAAGCAGGTCGGTGCTTATCCTGATGCGGAGAAAGCGAAAGACAGCCACGCTATTCGTCCCGGGAAGGGTAAAATGAGGAACCGCCGATACATTTCTAGGAAGGGCCCCTTGATCGTCTACGGCACGGAGGGTGCAAAGCTCGTCAAGGCTTTCCGGAACATTCCTGGGGTTGAGGTCGCTAATGTGGACAGACTTAATCTTCTGAAACTCGCTCCCGGTGGCCATCTTGGGAGGTTCGTGATTTGGACCAAATCAGCATTCGAGAAATTGGATTCAATCTACGGATCCTTCGAAAAAACTTCGGAGAAGAAGAATGGGTACTTGTTGCCCCGTTCAAAAATGGTTAATGCTGATTTGGCTAGGATTATCAACTCCGACGAGGTTCAGTCAGTGGTGAGGCCGATCAAAAAGGAGGTGAAGAGGGCACCAATGAAGAAGAACCCGCTCAAGAACTTGAATACTATGCTGAAGTTGAATCCGTATGCAAAGACTGCAAGAAGGATGGCGCTTCTGGCTGAGGCACAACGGGTCAAGGCCAAGCAGGAGAAGCTTGACAAGAAGAGGAAACAAATTCCGAAGGAGGAGGTTGCAGCCATCAAGGCTGCAGGCAAGGCCTGGTACCAGACAATGATCTCCGACAGCGATTACACTGAATTTGACAACTTCTCAAAGTGGCTTGGTGTCTCCCAGTGA 1221 0.5463 MAAAAARPLVTVQVLKSDMATDGGNAVPLPDVMKASIRPDIVTFVHSNISKNSRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVNQKRYAVVSAIAASAIPSLVMARGHRIESVPELPLVIGDSAESVEKTSAAIDILKQVGAYPDAEKAKDSHAIRPGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEVANVDRLNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFEKTSEKKNGYLLPRSKMVNADLARIINSDEVQSVVRPIKKEVKRAPMKKNPLKNLNTMLKLNPYAKTARRMALLAEAQRVKAKQEKLDKKRKQIPKEEVAAIKAAGKAWYQTMISDSDYTEFDNFSKWLGVSQ* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0765 406 Gene3D - 4 309 IPR023574 GO:0003735|GO:0005840|GO:0006412
Vvi8g0765 406 PANTHER 60S RIBOSOMAL PROTEIN L4 5 399 IPR045240 -
Vvi8g0765 406 Pfam 60S ribosomal protein L4 C-terminal domain 282 353 IPR025755 -
Vvi8g0765 406 Pfam Ribosomal protein L4/L1 family 27 267 IPR002136 GO:0003735|GO:0005840|GO:0006412
Vvi8g0765 406 MobiDBLite consensus disorder prediction 55 74 - -
Vvi8g0765 406 ProSitePatterns Ribosomal protein L1e signature. 121 147 IPR013000 -
Vvi8g0765 406 MobiDBLite consensus disorder prediction 55 96 - -
Vvi8g0765 406 FunFam 60S ribosomal protein L4 4 309 - -
Vvi8g0765 406 SUPERFAMILY Ribosomal protein L4 23 268 IPR023574 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0765 Vvi-Chr8 14139859 14141948 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0765 1 406 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 81.527 0.0 680
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0765 K02930 - vvi:100255110 797.734