Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0763 ATGTTGGATCTCAATCTTAATGATGTTTCGGATGATTCATTTCACGGTTCTACCCAGGCGGTGGATCCGGGGAAGCTCCTTGACCTTTCTAGCAACCAAATGGAAGATTCTGGAAGCTTCAATTCCTCCATCGTCAATGCCGATGCCTTGAGCAGCACCACCGCCGACGATGACTCTTCTTCTAACCACCTCGATCACTGCTGCGGCATTGTAGCGTTTAGCTTCGATTTCTTCAAGCAAAATGAAGATCATGACAATAAGAGCTCAGATTCTGTTACGAGGCAGTTTTTCCCGGTGACCAGTGGTGGGGAAGGTGACTGTTCTTTGGGTTCTTCTTTGCAGCATCCGTGTATCCTGCAGGTGGGTTCCGGTGGCCCGCTGCTGCCAAAGAAACCACAACAGCAACAGCAGGTGAAGAAGAGTCGGCGGGGGCCAAGGTCACGGAGCTCGCAGTATCGAGGAGTTACCTTTTATCGGAGAACTGGGAGATGGGAATCGCATATATGGGATTGTGGTAAACAAGTGTATTTGGGTGGATTTGACACTGCGCATGCTGCAGCTAGGGCATATGATCGAGCTGCCATCAAGTTCCGCGGTGCTGATGCCGATATCAATTTTGCTGTCAGTGATTATGACGAGGACATTAAGCAGATGAGTAACTTCACCAAGGAAGAGTTTGTGCATGTTCTCCGTCGCGGGAGCACTGGATTCTCGAGAGGAAGTTCCAAGTACAGGGGAGTGACACTGCACAAATGTGGTCGATGGGAAGCTCGAATGGGACAGTTTCTGGGCAAGAAGTATATTTATCTTGGTCTGTTCGATAGTGAGATAGAAGCTGCAAGGGCCTACGACAAGGCTGCTATAAAATGCAATGGACGAGAAGCAGTAACCAACTTTGAGCCAAGCACATACGAAGGAGAGATAATCTTCCCAGCTGATAATGGAGGGAGTAGCCAAAATCTAAACCTGTTACCCAATCTTGATCTGCACTTGGGAGTCGCTCCATATTTTTCTGATGAACCAATGTCTGATGAACCAGTTAGGAACAGCAAAGCAAATGGTTCTCCTTCCCGGCAGGGCCACGATGCCATGCCTGATGACAGGGGAGAAAGGATTGAGAACTCTACTTCAGCAACACTGGGGGTTCATCCATCATATGGCCTGGTAATGGCATCTGATCACCCTCCTAGCTGGAGTGGTGTAAATTCTCGTGTCTTTCCTATCTATAAGGAAAGAGCAATAGAGAAGAGGATTGAAGTTGATCACTTGCCAAACTGGGCATGGCAAAATCATGGCCCTTATGGTGGGGCTACTCCACCTCTCTTCTCTACTGCAGCATCATCAGGATTCTTGTCTTCGGTTACAACTGCTTCACCAGCTAATCCCACTCAAGGCAGCTTACAGAGTACAACAGTTCTCCAGCACTATTACTCTCCATCACTCACCAACACCACCAGTATATCCCCTTACTACTACTGCAGGAGCTGA 1488 0.4832 MLDLNLNDVSDDSFHGSTQAVDPGKLLDLSSNQMEDSGSFNSSIVNADALSSTTADDDSSSNHLDHCCGIVAFSFDFFKQNEDHDNKSSDSVTRQFFPVTSGGEGDCSLGSSLQHPCILQVGSGGPLLPKKPQQQQQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGADADINFAVSDYDEDIKQMSNFTKEEFVHVLRRGSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSEIEAARAYDKAAIKCNGREAVTNFEPSTYEGEIIFPADNGGSSQNLNLLPNLDLHLGVAPYFSDEPMSDEPVRNSKANGSPSRQGHDAMPDDRGERIENSTSATLGVHPSYGLVMASDHPPSWSGVNSRVFPIYKERAIEKRIEVDHLPNWAWQNHGPYGGATPPLFSTAASSGFLSSVTTASPANPTQGSLQSTTVLQHYYSPSLTNTTSISPYYYCRS* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0763 495 Gene3D AP2/ERF domain 242 301 IPR036955 GO:0003700|GO:0006355
Vvi8g0763 495 Gene3D AP2/ERF domain 150 209 IPR036955 GO:0003700|GO:0006355
Vvi8g0763 495 CDD AP2 242 302 IPR001471 GO:0003700|GO:0006355
Vvi8g0763 495 PRINTS Ethylene responsive element binding protein signature 244 255 IPR001471 GO:0003700|GO:0006355
Vvi8g0763 495 PRINTS Ethylene responsive element binding protein signature 282 302 IPR001471 GO:0003700|GO:0006355
Vvi8g0763 495 MobiDBLite consensus disorder prediction 124 152 - -
Vvi8g0763 495 MobiDBLite consensus disorder prediction 340 371 - -
Vvi8g0763 495 ProSiteProfiles AP2/ERF domain profile. 243 300 IPR001471 GO:0003700|GO:0006355
Vvi8g0763 495 Pfam AP2 domain 151 199 IPR001471 GO:0003700|GO:0006355
Vvi8g0763 495 Pfam AP2 domain 242 292 IPR001471 GO:0003700|GO:0006355
Vvi8g0763 495 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 88 365 - -
Vvi8g0763 495 FunFam AP2-like ethylene-responsive transcription factor 242 302 - -
Vvi8g0763 495 SUPERFAMILY DNA-binding domain 150 208 IPR016177 GO:0003677
Vvi8g0763 495 FunFam AP2-like ethylene-responsive transcription factor 150 209 - -
Vvi8g0763 495 ProSiteProfiles AP2/ERF domain profile. 151 207 IPR001471 GO:0003700|GO:0006355
Vvi8g0763 495 SMART rav1_2 151 213 IPR001471 GO:0003700|GO:0006355
Vvi8g0763 495 SMART rav1_2 243 306 IPR001471 GO:0003700|GO:0006355
Vvi8g0763 495 CDD AP2 151 209 IPR001471 GO:0003700|GO:0006355
Vvi8g0763 495 SUPERFAMILY DNA-binding domain 242 301 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0763 Vvi-Chr8 14133583 14136582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0763 92 332 AP2-EREBP Transcription Factor Family AT4G36920 67.323 1.69e-92 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vvi8g0763 AP2 1.2e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0763 K09284 - vvi:100244807 947.577