Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0750 ATGGGTTGGTTTCTTTGCTCTGGAAAATCAAACCAAGCTACCAAGAAAAAGAGGAAGAAGCCCGTTGATCAGATCCAAGTCCAAACCACTTCTGAGAAATTGAAGGCAAATCCTTCCTTCAATGTGAAGGAAGCCTCAAAGAATGGAGGGCCTGACCACATTGCAGCACAGACATTCACATTCCGTGAATTGGCTGCTGCTACTAAAAATTTCAGGGGAGAATGTCTTTTGGGAGAGGGGGGTTTTGGTAGGGTATATAAAGGTCGTATTGCAAATACTAATCAGGCTGTAGCTATCAAGCAACTTGATCGTAATGGATTGCAAGGGAATCGGGAATTCCTAGTCGAAGTATTGATGTTGAGTCTGCTTCACCACCCTAACCTTGTTAATCTAATTGGCTATTGTGCTGATGGAGATCAAAGACTACTAGTCTATGAGTACATGCCACTGGGATCTCTTGAAGATCATCTACATGATGTTTCACTTGGTAAGAAACGACTGGATTGGAATACAAGAATGAAAATAGCTGCTGGGGCAGCAAAAGGATTGGAGTATTTACATGACAAAGCCAGCCCCCCTGTTATATACCGTGATCTAAAATGCTCTAACATTTTGCTTGGTGAGGATTTTCATCCCAAGTTATCTGATTTTGGCTTGGCCAAACTTGGGCCTGTTGGAGATAATACCCATGTGTCTACAAGGGTTATGGGCACCTATGGATATTGTGCCCCAGAGTATGCAATGACAGGTCAATTGACTCTGAAATCAGATGTTTATAGCTTTGGGGTTGTTCTTTTGGAAATCATAACAGGCAGGAAAGCAATTGACAATTCTAAAGCTGCAGGAGAGCATAATCTGGTTGCTTGGGCAAGACCCCTGTTCAAAGATAGAAGGAAATTTTTACATATGGCAGATCCAATGCTACAAGGTCAGTATCCTTTAAGAGGGTTGTACCAAGCTCTTGCAGTTGCTGCAATGTGTGTTCAGGAGCAACCTAATCTGCGCCCACTTATTGTTGATGTTGTCACCGCTTTGACTTACCTGGCCGCACAAACATATGACCCTGACACTCAGCCAGTCCAAAGCTCCAGAGTCGCCCCTTCTACTCCACCTAGAGCCAAAAAGGATGGTGATAGGAAGCTCCCAAGCAGTGCTGGATCGCAAAAAGATCGAACCCGAAGACTAAATTAA 1191 0.4366 MGWFLCSGKSNQATKKKRKKPVDQIQVQTTSEKLKANPSFNVKEASKNGGPDHIAAQTFTFRELAAATKNFRGECLLGEGGFGRVYKGRIANTNQAVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDVSLGKKRLDWNTRMKIAAGAAKGLEYLHDKASPPVIYRDLKCSNILLGEDFHPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSKAAGEHNLVAWARPLFKDRRKFLHMADPMLQGQYPLRGLYQALAVAAMCVQEQPNLRPLIVDVVTALTYLAAQTYDPDTQPVQSSRVAPSTPPRAKKDGDRKLPSSAGSQKDRTRRLN* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0750 396 PANTHER OS07G0668900 PROTEIN 13 357 - -
Vvi8g0750 396 FunFam Serine/threonine-protein kinase PBS1 148 363 - -
Vvi8g0750 396 MobiDBLite consensus disorder prediction 371 396 - -
Vvi8g0750 396 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Vvi8g0750 396 Gene3D Phosphorylase Kinase; domain 1 16 147 - -
Vvi8g0750 396 MobiDBLite consensus disorder prediction 356 396 - -
Vvi8g0750 396 FunFam Serine/threonine-protein kinase PBS1 43 147 - -
Vvi8g0750 396 Pfam Protein tyrosine and serine/threonine kinase 76 289 IPR001245 GO:0004672|GO:0006468
Vvi8g0750 396 ProSitePatterns Protein kinases ATP-binding region signature. 77 100 IPR017441 GO:0005524
Vvi8g0750 396 Gene3D Transferase(Phosphotransferase) domain 1 148 364 - -
Vvi8g0750 396 SMART serkin_6 71 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0750 396 SUPERFAMILY Protein kinase-like (PK-like) 57 367 IPR011009 -
Vvi8g0750 396 ProSiteProfiles Protein kinase domain profile. 71 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0750 396 CDD STKc_IRAK 77 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0750 Vvi-Chr8 14024179 14027606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0750 37 369 Glycoside Hydrolase AT3G07070 65.029 4.26e-160 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Vvi8g0750 PK_Tyr_Ser-Thr 4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0750 - - vvi:100251737 800.816