Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0740 ATGGCAGAAGGCCAAAACTCAACCGAAGCAATCATCATGTCTGCACTCTCCACCCTTTCCGCTACCCAAATCTCACACCTGACTCGCTGCGTTTACTCGATTCTCCGCTACCACCACCTCCGCCTCTCCTCTCTTCTCTCCTCCCCTACTATCTTCGCCCACACCCTCCACCACCTCCACTCCATCTCTCTCCCCCATAAAACCCTCCTCATCGCCCGCCACCTCCTCTCCACCCTCCATCACCTCACCCGCTTCTTCCAGTCCACCGTCCCTCCTCCATACTCCCGCACTTCCCTCAAATTGCGTGACCTTGACGCCGTCTTGCTCCTCCTCCTCCTCTGCCAGCTCCGCCAGCACGACCCTCAAGCCCTCGAAACTTGCCCATCCGAGTGGCGTACTATTCTCTGCACCCATTTCTCCAAAACCATGTTGTCGCTTTCGGGCACTGGAGCCACCAGCGGTGCAGTTCTGATTCCGTACATCGAGGTCGCAGCACGGTGCCGGAGGTTCGTTGGGGCAGTCCTGAGTGGCGGCGGCGGCGGGGGAGGAGAGAAGTTGGGGAGGGAGGTGGGGGCATCGACAGCGTCGGTGGTGGCTCTGCCGTCGGTCGAAGTAAGCGATGGTGGAGTGGAGTGCGTGATCTGTAAAGAGGAAATGCGGCAAGGCAGAGATGTGTGCGAGTTGCCATGTGAGCACCTGTTCCACTGGATGTGCATTTTGCCTTGGCTGGTCAAGAGGAACACCTGTCCTTGTTGCAGGTTCCAGTTGCCGTCCGATGATGTGTTCGCAGAGATCGAACGGCTCTGGGACGTTGTAGTGAAGTCAAGCAGTGTGAATCCTCATGGTGAATGTACATGA 858 0.5781 MAEGQNSTEAIIMSALSTLSATQISHLTRCVYSILRYHHLRLSSLLSSPTIFAHTLHHLHSISLPHKTLLIARHLLSTLHHLTRFFQSTVPPPYSRTSLKLRDLDAVLLLLLLCQLRQHDPQALETCPSEWRTILCTHFSKTMLSLSGTGATSGAVLIPYIEVAARCRRFVGAVLSGGGGGGGEKLGREVGASTASVVALPSVEVSDGGVECVICKEEMRQGRDVCELPCEHLFHWMCILPWLVKRNTCPCCRFQLPSDDVFAEIERLWDVVVKSSSVNPHGECT* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0740 285 CDD RING-H2_PA-TM-RING 211 253 - -
Vvi8g0740 285 SUPERFAMILY RING/U-box 208 259 - -
Vvi8g0740 285 SMART ring_2 212 252 IPR001841 -
Vvi8g0740 285 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 191 257 - -
Vvi8g0740 285 Pfam Ring finger domain 211 253 IPR001841 -
Vvi8g0740 285 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 184 259 IPR013083 -
Vvi8g0740 285 ProSiteProfiles Zinc finger RING-type profile. 212 253 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0740 Vvi-Chr8 13968603 13969460 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0740 3 278 C3H Transcription Factor Family AT5G02750 48.789 8.27e-78 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0740 - - vvi:104880042 529.25