Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0728 ATGGAGCTCCAAGAACCTGTCTGGAGATCAAAACTCAGAGTGTCTCCAACTCTTGGAGAGCTCTTGAAGCGAGTTGGAGACGCACGGGATGACACTCCCGGCTGCCAAACTACATCGTCGCATCAGCGGGTTATCGATCTAAACGATGCAATTCCGCACCCAAGGTCTTTTCCCTTCGTTCTTTCTTTTCACAACCTTTCTTACAGCGTCAAAGTTCGCCGCAAAATGAAGTTTCCGGGGTTGTTTTGCTGGAAGGAAGGGCCTGGCTTGTCCGAGGATGAGGTGGAGACTAAAGACAGCGGCATGAAGGTTTTGTTGAATGACATTTCGGGTGAGGCGAGAGAAGGCGAAATAATGGGGGTTCTTGGCGCAAGTGGGTCTGGTAAGTCGACGTTGATCGATGCGCTTGCGGATCGGATTGCGAAGGATAGTTTGAAGGGGTCTGTGACTCTGAATGACGAAGTTTTGGAGTCAAAGCTTCTGAAAGTGATATCTGCTTATGTTATGCAAGACGATCTTCTGTTTCCTATGCTCACTGTGGAAGAAACCCTCATGTTCTCCGCTGAGTTTAGGCTTCCTCGCTCTCTCTCCAGCTCTAAGAAGAAAGCAAGAGTTCAAGCATTGATCGACCAGCTCGGCCTGCGAAGTGCAGCAAAGACTGTGATCGGCGACGAGGGCCACAGGGGAGTCTCCGGAGGTGAGCGCCGGCGAGTTTCCATTGGGATTGATATAATTCATGACCCAATTGTCTTATTTCTTGATGAGCCAACGTCGGGTCTTGACTCCACCAGTGCATTCATGGTGGTGAAGGTGCTGCAACGAATTGCCCAGAGCGGAAGCATCGTCATCATGTCCATACACCAACCCAGTTATAGAATCCTTGGCCTTCTCGATCGTTTGATCTTCCTGTCGCGTGGAAATACCGTTTACAGTGGATCTCCCTCGAGTCTCCCGCTTTTCTTCGCTGAGTTTGGACACCCCATTCCGGAGACCGAGAACCGAACGGAGTTCGCCCTAGATTTGATCCGTGAGCTTGAAGGATCTCCCGGTGGAACCAAGACCTTAGTCGAATTCAATAAGTCATGGCAAAGAATGACAAATCCTCAAACCGACGTCGAAGAGGGAGCCAAACCATCTCTCAAAGATGCCATAAGCGCAAGCATTTCAAGGGGAAAACTAGTCTCGGGAGCCTCTAACGATGCAAACCCCGCATCTCTAGTTCCCACTTTCGCCAATCCAATCTGGATCGAGATGGTGGTGTTGGGCAAAAGATCTCTCAAGAACTCGAAAAGAATGCCTGAACTTTTCGGAATCCGTCTAGGCGCGGTTCTCGTGACTGGAATCATTCTGGCCACCATTTTCTTGCAACTGGACAGCTCGCCCAAAGGGGTCCAAGAACGATTAGGGTTCTTTGCTTTTGCAATGTCCACAACCTTCTACACATGCGCTGAAGCCATCCCAGTCTTCCTCCAAGAGCGCTATATCTTCATGAGAGAAACCGCCTATAACGCTTATCGCCGCTCGTCCTACGTTCTAGCCCACTCTATCATTTCCATCCCTGCCCTAGTTTTCCTCTCATTCGCATTCGCCGCCACCACTTACTGGGCGGTGGGCCTGGCGGGCGGCGTCTCCGGCTTCCTCTTCTTCTTCTTCATGATCTTCGCCTCTTTCTGGGCGGGAAGTTCCTTCGTCACCTTCCTATCCGGAGTGGTGTCTCACGTGATGCTGGGCTACACGGTGGTGGTGGCCATTCTAGCCTACTTTCTCCTGTTCAGCGGCTTCTTCATCTCCAGAAACAGAATCCCACCCTACTGGATATGGTTCCACTACATTTCTCTGGTGAAGTACCCGTATGAAGGGGTATTGCATAACGAATTCGAAGACCCAATGAAGTGCTTCGTGAGGGGGATTCAGATGTTCGACAACACGCCACTTGGGGCGGTGCCTGAGGCGTTGAAGGTGAGGCTGCTGAAAAGCATGAGCGATACACTGGGAATGAGCATTACCAGTTCTACATGCGTGACTACTGGGTCGGATGTATTGAAACAGCAAGGAGTAACCGATATAAGCAAGTGGAACTGCCTATGGATCACACTTGCTTTGGGGTTTTTCTTCAGGTTTATGTTTTACCTCACTTTGTTGTTTGGGAGCAAGAACAAGAGGACCTTGAAGACAGTTCAGTCTCTCTCTCTTCCATGTTTCAATTTATGA 2211 0.5007 MELQEPVWRSKLRVSPTLGELLKRVGDARDDTPGCQTTSSHQRVIDLNDAIPHPRSFPFVLSFHNLSYSVKVRRKMKFPGLFCWKEGPGLSEDEVETKDSGMKVLLNDISGEAREGEIMGVLGASGSGKSTLIDALADRIAKDSLKGSVTLNDEVLESKLLKVISAYVMQDDLLFPMLTVEETLMFSAEFRLPRSLSSSKKKARVQALIDQLGLRSAAKTVIGDEGHRGVSGGERRRVSIGIDIIHDPIVLFLDEPTSGLDSTSAFMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDRLIFLSRGNTVYSGSPSSLPLFFAEFGHPIPETENRTEFALDLIRELEGSPGGTKTLVEFNKSWQRMTNPQTDVEEGAKPSLKDAISASISRGKLVSGASNDANPASLVPTFANPIWIEMVVLGKRSLKNSKRMPELFGIRLGAVLVTGIILATIFLQLDSSPKGVQERLGFFAFAMSTTFYTCAEAIPVFLQERYIFMRETAYNAYRRSSYVLAHSIISIPALVFLSFAFAATTYWAVGLAGGVSGFLFFFFMIFASFWAGSSFVTFLSGVVSHVMLGYTVVVAILAYFLLFSGFFISRNRIPPYWIWFHYISLVKYPYEGVLHNEFEDPMKCFVRGIQMFDNTPLGAVPEALKVRLLKSMSDTLGMSITSSTCVTTGSDVLKQQGVTDISKWNCLWITLALGFFFRFMFYLTLLFGSKNKRTLKTVQSLSLPCFNL* 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0728 736 Pfam ABC-2 type transporter 287 346 IPR043926 GO:0140359
Vvi8g0728 736 Pfam ABC-2 type transporter 419 626 IPR013525 GO:0016020|GO:0140359
Vvi8g0728 736 ProSitePatterns ABC transporters family signature. 230 244 IPR017871 GO:0005524|GO:0016887
Vvi8g0728 736 SMART AAA_5 115 307 IPR003593 GO:0016887
Vvi8g0728 736 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 90 330 IPR003439 GO:0005524
Vvi8g0728 736 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 39 709 - -
Vvi8g0728 736 FunFam ABC transporter G family member 6 95 321 - -
Vvi8g0728 736 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 103 317 IPR027417 -
Vvi8g0728 736 Gene3D - 94 319 IPR027417 -
Vvi8g0728 736 Pfam ABC transporter 106 258 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0728 Vvi-Chr8 13903104 13905474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0728 105 290 Calmodulin-binding Proteins AT2G36910 29.630 3.10e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0728 K05681 - vvi:100253445 1370.53