Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0727 ATGGGAAAGGGTGGGGAGGACTATGGGAAGCGGGAGGTTTCGAGCTCTAAGGTGAGTGGCCCGGAAGTGTTTCCGGCGTGGGGGAGGGAGGTTCAGGAATGTGAGAAGCATTATGGGGTGAGTAGGAGATCGGGGTTGAGTTCCAGCGATGTGGAGAAGCGGCGCAAGATCTACGGGTTGAATGAATTGGAGAAGCACGAGGGGCCGTCGATTTGGAGTTTAATTCTGGAGCAGTTTCAGGATACTCTGGTTCGGATTCTACTCGTGGCCGCGGTGATTTCGTTCGTGCTCGCTTGGTACGATGGCGAGGAGGGGGGTGAGACGGAGATTACGGCGTTTGTCGAGCCTCTGGTGATTTTCTTGATATTGATTGCGAATGCTATTGTTGGGGTTTGGCAAGAGAACAATGCGGAGAAGGCGTTGGAGGCCCTTAAGGAGATTCAATCTGAGCAGGCTGCCGTGATCCGCAATAATCAACGCATTCCCAATTTGCCGGCGAAGGAGCTTGTGCCCGGTGACATCGTGGAACTTAAGGTCGGGGATAAGGTGCCTGCAGATATGCGGGTTGTGGAATTGATTAGCTCAACTCTGCGTCTGGAACAGGGGTCGTTGACCGGAGAGAGTGAAGCAGTGAATAAGACAAATAAGCCTGTCCCCGAGGATGCCGACATTCAAGGGAAAAGGTGTATGGTTTTTGCAGGAACGACTGTTGTGAATGGGAACTGCATTTGCTTGGTGACCCAGACGGGTATGGAGACAGAGATTGGAAAGGTGCATACTCAAATTCATGTGGCTTCCCAGAGTGAGGAAGACACGCCTTTGAAGAAAAAGTTGAATGAGTTTGGAGAGTCGCTGACAGTGATAATTGGAGTGATATGTGCGTTGGTATGGCTTATCAATGTGAAGTACTTCCTTAATTGGGAGTATGTTGATGGGTGGCCGAGTAATTTCAAGTTCTCATTTGAGAAGTGCACCTATTACTTCAAGATTGCAGTGGCATTGGCTGTTGCTGCCATTCCGGAAGGTTTACCGGCAGTTATCACCACTTGCTTGGCTCTAGGCACACGCAAGATGGCTCAGAAGAATGCTCTTGTGCGAAAGCTGCCAAGTGTTGAAACTCTGGGCTGCACAACTGTGATTTGTTCAGATAAAACGGGTACCTTAACTACTAACCAGATGGCAGTGGCAAAGCTGGTGGCCATGGGTTCTAGAGCAGGAGCACTTCGAAAATTCAGAGTGGATGGGACCACATACAGTCCCTTTGATGGAAAAATACACGACTGGCCCTGTGGTCGCATGGATGCTAATCTTCAAATGATTGCGAAGATTTCTGCTGTATGCAATGACGCTGGTGTGGCACAGTCAGAGCATAAGTATGTTGCCAATGGAATGCCAACAGAGGCAGCTCTGAAGGTTCTGGTCGAGAAAATGGGTCCTCCTGCAGTCGATGATGACAAATCATTTTCAAGTTCTGGTGATCTGCTACGTTGCTGCCAACGCTGGAATGAAAATGAACGTCGAATTGCTACTCTTGAGTTTGATCGTGATCGCAAGTCTATGGGGGTTATTGTCAATTCTCACTCAGGAAAAAAGTCATTGCTAGTGAAGGGTGCAGTAGAAAATCTATTGGAGAGAAGCAACTCTGTTCAGTTGCTTGATGGTTCTGTTGTAGAACTGGGTGATAATTCTAGGAGCCTTATTTTAGAAGCACTTCACGAAATGTCAAGTGGTGCATTACGTTGTTTGGGTTTTGCATACAAAGATGAGCTCCCTGACTTTGCAACATATGATGGTGATGAAAATCATCCAGCTCATGGTCTTCTACTCAATCCTGCCAACTATTCATCAATTGAGAGGAACCTTACTTTTGTAGGCTTGGTTGGGCTGAGGGATCCTCCTCGTGCAGAGGTTCACCAAGCAATTGAAGACTGCAGAGCAGCCGGTATTCGTGTTATGGTCATCACAGGCGATAACAAGAATACAGCAGAAGCTATTTGTCATGAAATAGGTGTATTTGGACCTAATGAGGACATTAGGTCGAAAAGCTTAACTGGGAAAGAGTTCATGGAACTTCGGGATCAGAAAGCACATCTGAGACAAAATGGTGGGCTTCTGTTCTCTAGGGCTGAACCTAGGCATAAACAAGAGATCGTGAGGCTGCTTAAAGAAGATGGGGAAGTGGTCGCCATGACTGGTGATGGAGTGAATGATGCGCCTGCCTTGAAACTGGCTGATATTGGCATTGCTATGGGTATTGCTGGGACAGAGGTTGCTAAAGAAGCCTCTGATATGGTGTTGGCAGACGATAATTTTAGTACAATAGTTGCTGCTGTTGGGGAAGGGCGATCTATCTACAACAATATGAAGGCTTTTATCAGGTATATGATTTCCTCAAATATTGGTGAGGTTGCATCCATATTTTTAACAGCAGCTTTAGGGATCCCTGAAGGGTTGATACCTGTTCAGCTTTTATGGGTCAACCTTGTTACTGATGGCCCCCCTGCAACTGCTTTGGGATTCAATCCACCAGATAGGGACATAATGAAGAAACCACCTCGTAGAAGTGATGACTCACTCATCAGTGCTTGGATCTTGTTCCGCTATCTGGTAATTGGATTGTATGTTGGAATAGCAACCGTTGGTGTATTTGTCATTTGGTACACGCATAGTTCCTTCTTGGGCATTGACCTCAGTGGGGATGGCCACACCCTTGTCACCTACACCCAGCTTGCTGACTGGGGCCAATGCTCATCCTGGGAGAATTTCACTATTTCACCCTTCACAGCTGGTGCTCAGGTGTTCACTTTCAACGACAATCCCTGTGATTACTTTCAGGGTGGCAAAGTGAAGGCCACTACACTGTCTCTTTCAGTCCTGGTTGCCATTGAAATGTTCAATTCCCTCAATGCCCTTTCAGAGGATGGGAGTCTTCTAGTGATGCCTCCATGGGTCAATCCGTGGCTCCTGGTAGCCATGTCTGTCTCATTTGGCTTGCACTTTCTGATTCTGTATGTGCCGGTTCTTGCTCAAGTATTCGGGATTGTGCCCCTCAGTTTGAACGAATGGCTATTGGTTTTGGCGGTTGCATTCCCAGTGATTTTAATTGATGAGATTCTAAAGTTGGTGGGGCGATGTACAAGCGGTTTTCAAACATCCAGCACAAGGAAATCCTTGAAGCCGAAGTCAGAATGA 3192 0.4721 MGKGGEDYGKREVSSSKVSGPEVFPAWGREVQECEKHYGVSRRSGLSSSDVEKRRKIYGLNELEKHEGPSIWSLILEQFQDTLVRILLVAAVISFVLAWYDGEEGGETEITAFVEPLVIFLILIANAIVGVWQENNAEKALEALKEIQSEQAAVIRNNQRIPNLPAKELVPGDIVELKVGDKVPADMRVVELISSTLRLEQGSLTGESEAVNKTNKPVPEDADIQGKRCMVFAGTTVVNGNCICLVTQTGMETEIGKVHTQIHVASQSEEDTPLKKKLNEFGESLTVIIGVICALVWLINVKYFLNWEYVDGWPSNFKFSFEKCTYYFKIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNALVRKLPSVETLGCTTVICSDKTGTLTTNQMAVAKLVAMGSRAGALRKFRVDGTTYSPFDGKIHDWPCGRMDANLQMIAKISAVCNDAGVAQSEHKYVANGMPTEAALKVLVEKMGPPAVDDDKSFSSSGDLLRCCQRWNENERRIATLEFDRDRKSMGVIVNSHSGKKSLLVKGAVENLLERSNSVQLLDGSVVELGDNSRSLILEALHEMSSGALRCLGFAYKDELPDFATYDGDENHPAHGLLLNPANYSSIERNLTFVGLVGLRDPPRAEVHQAIEDCRAAGIRVMVITGDNKNTAEAICHEIGVFGPNEDIRSKSLTGKEFMELRDQKAHLRQNGGLLFSRAEPRHKQEIVRLLKEDGEVVAMTGDGVNDAPALKLADIGIAMGIAGTEVAKEASDMVLADDNFSTIVAAVGEGRSIYNNMKAFIRYMISSNIGEVASIFLTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDRDIMKKPPRRSDDSLISAWILFRYLVIGLYVGIATVGVFVIWYTHSSFLGIDLSGDGHTLVTYTQLADWGQCSSWENFTISPFTAGAQVFTFNDNPCDYFQGGKVKATTLSLSVLVAIEMFNSLNALSEDGSLLVMPPWVNPWLLVAMSVSFGLHFLILYVPVLAQVFGIVPLSLNEWLLVLAVAFPVILIDEILKLVGRCTSGFQTSSTRKSLKPKSE* 1064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0727 1063 NCBIfam HAD-IC family P-type ATPase 118 308 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi8g0727 1063 NCBIfam HAD-IC family P-type ATPase 320 402 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi8g0727 1063 NCBIfam HAD-IC family P-type ATPase 705 812 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vvi8g0727 1063 FunFam calcium-transporting ATPase, endoplasmic reticulum-type 391 632 - -
Vvi8g0727 1063 Gene3D - 391 632 IPR023299 GO:0000166
Vvi8g0727 1063 PRINTS P-type cation-transporting ATPase superfamily signature 381 395 - -
Vvi8g0727 1063 PRINTS P-type cation-transporting ATPase superfamily signature 731 750 - -
Vvi8g0727 1063 PRINTS P-type cation-transporting ATPase superfamily signature 625 636 - -
Vvi8g0727 1063 PRINTS P-type cation-transporting ATPase superfamily signature 755 767 - -
Vvi8g0727 1063 PRINTS P-type cation-transporting ATPase superfamily signature 647 657 - -
Vvi8g0727 1063 PRINTS P-type cation-transporting ATPase superfamily signature 200 214 - -
Vvi8g0727 1063 SUPERFAMILY Calcium ATPase, transduction domain A 151 260 IPR008250 -
Vvi8g0727 1063 SUPERFAMILY HAD-like 379 835 IPR036412 -
Vvi8g0727 1063 SMART Cation_ATPase_N_a_2 25 99 IPR004014 -
Vvi8g0727 1063 PANTHER CALCIUM-TRANSPORTING ATPASE 31 1048 - -
Vvi8g0727 1063 SFLD p-type atpase 362 783 IPR044492 -
Vvi8g0727 1063 ProSitePatterns E1-E2 ATPases phosphorylation site. 383 389 IPR018303 -
Vvi8g0727 1063 FunFam Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 241 401 - -
Vvi8g0727 1063 SFLD Haloacid Dehalogenase 362 783 - -
Vvi8g0727 1063 FunFam Calcium-transporting P-type ATPase, putative 627 776 - -
Vvi8g0727 1063 Pfam Cation transporter/ATPase, N-terminus 29 94 IPR004014 -
Vvi8g0727 1063 Pfam Cation transporting ATPase, C-terminus 816 1042 IPR006068 -
Vvi8g0727 1063 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 388 629 IPR023299 GO:0000166
Vvi8g0727 1063 MobiDBLite consensus disorder prediction 1 22 - -
Vvi8g0727 1063 Pfam haloacid dehalogenase-like hydrolase 378 745 - -
Vvi8g0727 1063 FunFam Calcium-transporting ATPase, putative 126 263 - -
Vvi8g0727 1063 Pfam E1-E2 ATPase 147 361 - -
Vvi8g0727 1063 FunFam ECA1 (ER-TYPE CA2+-ATPASE 1) 795 1049 - -
Vvi8g0727 1063 Gene3D - 45 265 - -
Vvi8g0727 1063 SUPERFAMILY Calcium ATPase, transmembrane domain M 29 1045 IPR023298 -
Vvi8g0727 1063 Gene3D - 77 1044 - -
Vvi8g0727 1063 Gene3D - 378 776 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0727 Vvi-Chr8 13892022 13898857 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0727 1 1063 Primary Pumps ATPases(2) AT1G07670 80.339 0.0 1758
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0727 K01537 - vvi:100248326 2110.49