Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0719 ATGGGAGGTGCTCACGGCCGTTGCTCTGGCACTCATCGGAAGCATCCCACCCCCGCCTACACCACTTTTCCGGACACAACAGCCCCTGCCTCAGCCTTTGGTCGTGATCCATCAAACACAGTCCGCACCAACATGTCTTGTCTGCCTTACGCTCATGTTGATTCCAACTTAAGAGCTCTGGCTGGGCAGGCCGAGGGTTTCGGCCGTCTTGCCATTGGTGGTCTTCACGGACCTCTTTATCATGTCACCACTCTAGCAGATGATGGGCCAGGATCACTTCGTGATGGATGTCGTAAGAAAGAACCACTTTGGATTGTCTTTGAAGTTTCAGGCATCATTCATCTCTCATCTTACCTGAATGTATCATCTTATAAAACTATTGATGGGCGGGGCCAGAGGATAAAACTCACAGGAAAGGGTTTAAGGCTGAAGGAATGTGAGCATGTAATTATATGCAATCTAGAGTTTGAAGGTGGTAGAGGACCTGATGTTGATGGCATTCAAATAAAACCTAATTCAAAGCACATATGGATTGATCGTTGCAGCCTCCGTGATTTTGATGATGGACTGATTGATATCACTCGTGCAAGCACGGATATTACCATTTCCAGATGTCACTTCTCACAGCATGACAAGACGATGCTCATTGGAGCAGACCCATCTCACACTGGTGATAGATGTATTCGGGTGACCATTCATCATTGCTTTTTCGATGGCACTCGACAGCGGCACCCTCGTGTTAGATATGGGAAAGTACATCTATATAATAATTACACCAGAAACTGGGGCATTTATGCTGTTTGTGCCAGTGTAGAATCACAGATATACTCCCAATGCAATATATACGAAGCAGGACATAAGAAGGTGGCATTTAAATATCTTACAGAGAAGGCAGCTGACAAAGAAGAGGAAAGAACTGGCTGTCTAAGGTCAGAAGGGGACTTGTTCATAAACGGAACTCAAGCAGGCTTAATGACTGTGGCCAGTGAAATGTTTCACCCTCGGGAATTCTATCCCACATGGACAGTTGAGGCTCCTTCTGATGCTCTTAAGCAGGTTCTCCATCATTGTACAGGATGGCAGTGTGTTCCCCGGCCAGCAGATGAAGCAGCAATTGCTTAG 1122 0.4643 MGGAHGRCSGTHRKHPTPAYTTFPDTTAPASAFGRDPSNTVRTNMSCLPYAHVDSNLRALAGQAEGFGRLAIGGLHGPLYHVTTLADDGPGSLRDGCRKKEPLWIVFEVSGIIHLSSYLNVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLEFEGGRGPDVDGIQIKPNSKHIWIDRCSLRDFDDGLIDITRASTDITISRCHFSQHDKTMLIGADPSHTGDRCIRVTIHHCFFDGTRQRHPRVRYGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGHKKVAFKYLTEKAADKEEERTGCLRSEGDLFINGTQAGLMTVASEMFHPREFYPTWTVEAPSDALKQVLHHCTGWQCVPRPADEAAIA* 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0719 373 PANTHER PECTATE LYASE 18-RELATED 39 322 IPR045032 GO:0030570
Vvi8g0719 373 SUPERFAMILY Pectin lyase-like 61 362 IPR011050 -
Vvi8g0719 373 Gene3D - 44 357 IPR012334 -
Vvi8g0719 373 MobiDBLite consensus disorder prediction 1 36 - -
Vvi8g0719 373 SMART amb_all 75 288 IPR002022 -
Vvi8g0719 373 PRINTS Pollen allergen Amb family signature 63 80 IPR018082 -
Vvi8g0719 373 PRINTS Pollen allergen Amb family signature 243 262 IPR018082 -
Vvi8g0719 373 PRINTS Pollen allergen Amb family signature 265 284 IPR018082 -
Vvi8g0719 373 Pfam Pectate lyase 119 281 IPR002022 -
Vvi8g0719 373 MobiDBLite consensus disorder prediction 20 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0719 Vvi-Chr8 13772865 13779558 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0719 85 368 Polysaccharide Lyase AT3G55140 79.021 2.31e-174 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0719 K01728 - vvi:100255011 789.645