Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0708 ATGGAGACACAGAGGATCACAGAATTTCCACACAAGAACATGGACAAACGCCCGAGGAAACGTCCTCGCTTGACCTGGGACATGCCTCCTCCCCTTCCCCCTCCCAAGGTTGTTCCGGGGATGTATTGCAGTCAGGAGTTTGTGTCTAACTACCCCTACTCGTCTCTTTTCTACAAGGGAGTCACTCGCAATGGATCACCGCCTTGGAGGCCTGATGATAAGGACGGCCATTATATTTTTGCCATTGGAGAAAATTTAACTCCGAGATACAGGATTATCAGCAAGATGGGTGAAGGGACATTTGGGCAAGTGCTGGAATGCTTTGACAATGACAAGAAAGAAGTTGTGGCAATTAAAATTGTTCGTTCAATACATAAGTACCGTGAAGCTGCAATGATTGAAATTGATGTGCTACAGAAGCTTGCCAGGCATGATGTTGGAGGCACTCGTTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATTTGTATTGTCTTTGAGAAGCTTGGACCAAGCTTATACGATTTTCTCCGCAAAAACAGCTACCGTTCTTTTCCTATTGATCTTGTTCGGGAGCTTGGCAGACAACTTTTGGAGTCTGTAGCATTTATGCATGATTTACGCCTTATCCACACTGATCTGAAGCCAGAAAATATTCTTCTTGTTTCTTCAGATTACATCAAAGTGCCAGATTATAAGTTTCTATCACGGACTATTAAAGATGGTTCCTATTTCAAGAATCTGCCTAAGTCAAGCGCCATTAAGCTCATTGATTTTGGGAGTACAACATTTGAACACCAGGATCACAACTATGTGGTGTCAACAAGACATTACCGTGCACCAGAGGTTATTTTGGGCCTTGGATGGAACTACCCTTGTGATCTATGGAGTGTAGGATGCATACTTATTGAACTTTGCTCAGGGGAGGCCCTTTTCCAAACACATGAGAACTTGGAACATCTTGCAATGATGGAGAGGGTGTTGGGACCTCTGCCCCAACATATGGTGCTGAGAGCTGACCGCCGTGCTGAGAAATATTTCAGGAGAGGTGCACGATTAGATTGGCCCGAGGGCGCAACCTCTAGAGAAAGCATGAGAGCAGTTTGGAAATTGCCCCGTCTTCAGAACCTTGTAATGCAGCATGTGGATCACTCTGCTGGTGATCTGATTGATCTCTTGCAAGGGCTGCTAAGATATGACCCAGCGGAGCGGCTTAAAGCAAGGGAAGCTCTCAGACATCCTTTTTTCACAAGGGATGCGAGAAGATGTGGCTACCCCTTGTAA 1290 0.4519 METQRITEFPHKNMDKRPRKRPRLTWDMPPPLPPPKVVPGMYCSQEFVSNYPYSSLFYKGVTRNGSPPWRPDDKDGHYIFAIGENLTPRYRIISKMGEGTFGQVLECFDNDKKEVVAIKIVRSIHKYREAAMIEIDVLQKLARHDVGGTRCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVRELGRQLLESVAFMHDLRLIHTDLKPENILLVSSDYIKVPDYKFLSRTIKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHNYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILIELCSGEALFQTHENLEHLAMMERVLGPLPQHMVLRADRRAEKYFRRGARLDWPEGATSRESMRAVWKLPRLQNLVMQHVDHSAGDLIDLLQGLLRYDPAERLKAREALRHPFFTRDARRCGYPL* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0708 429 Gene3D Transferase(Phosphotransferase) domain 1 144 418 - -
Vvi8g0708 429 Pfam Protein kinase domain 90 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0708 429 MobiDBLite consensus disorder prediction 1 24 - -
Vvi8g0708 429 FunFam Serine/threonine-protein kinase AFC2 77 170 - -
Vvi8g0708 429 CDD PKc_CLK 77 418 - -
Vvi8g0708 429 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 2 421 - -
Vvi8g0708 429 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672|GO:0006468
Vvi8g0708 429 Gene3D Phosphorylase Kinase; domain 1 77 170 - -
Vvi8g0708 429 SUPERFAMILY Protein kinase-like (PK-like) 77 421 IPR011009 -
Vvi8g0708 429 ProSiteProfiles Protein kinase domain profile. 90 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0708 429 FunFam Serine/threonine-protein kinase AFC2 166 418 - -
Vvi8g0708 429 MobiDBLite consensus disorder prediction 1 30 - -
Vvi8g0708 429 SMART serkin_6 90 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0708 Vvi-Chr8 13661696 13667429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0708 90 418 Core Cell Cycle Gene Families AT1G76540 26.901 7.73e-31 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Vvi8g0708 Pkinase 7.4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0708 K08287 - vvi:100251648 874.004