Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0707 ATGGCTCCTTCGAAAGTTGAATCCACAAAAAAGACTGACCCAAAAGCCCAGGCCCAAAAGGCTGCCAAGACAGTGAAATCAGGTGGAGGGACTTTTAAGAAGAAAGCCAAGAAAATACGAACATCAGTTACATTTCACCGGCCAAGGACACTGAAGAAGGAAAGAAATCCCAAGTACCCTCGCATTAGTGCCCCTCCCAGGAACAAGCTTGACCAGTACCAGATCCTCAAATATCCCCTCACAACTGAGTCTGCAATGAAGAAAATTGAAGACAACAACACTCTTGTCTTCATTGTTGACATCCGTGCTGACAAAAAGAAGATAAAGGATGCAATGAAGAAAATGTATGACATTCAGACCAAGAAAGTGAATACCTTGATCAGGCCTGATGGGACAAAGAAAGCATATGTTAGGTTGACGCCAGATTATGATGCTTTGGATGTGGCAAACAAGATTGGTATTATTTAA 468 0.4231 MAPSKVESTKKTDPKAQAQKAAKTVKSGGGTFKKKAKKIRTSVTFHRPRTLKKERNPKYPRISAPPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAMKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0707 155 ProSitePatterns Ribosomal protein L23 signature. 133 148 IPR001014 GO:0019843
Vvi8g0707 155 FunFam 60S ribosomal protein L23a 35 155 - -
Vvi8g0707 155 Hamap 50S ribosomal protein L23 [rplW]. 75 155 IPR013025 GO:0003735|GO:0005840|GO:0006412
Vvi8g0707 155 Pfam Ribosomal protein L23 75 137 IPR013025 GO:0003735|GO:0005840|GO:0006412
Vvi8g0707 155 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 73 148 IPR012678 GO:0003735|GO:0005840|GO:0006412
Vvi8g0707 155 PANTHER 60S RIBOSOMAL PROTEIN L23A 8 155 IPR013025 GO:0003735|GO:0005840|GO:0006412
Vvi8g0707 155 NCBIfam 50S ribosomal protein L23 79 155 IPR019985 GO:0003735|GO:0005840|GO:0006412
Vvi8g0707 155 MobiDBLite consensus disorder prediction 1 66 - -
Vvi8g0707 155 Pfam Ribosomal protein L23, N-terminal domain 15 65 IPR005633 -
Vvi8g0707 155 MobiDBLite consensus disorder prediction 30 46 - -
Vvi8g0707 155 Gene3D - 36 155 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0707 Vvi-Chr8 13654508 13657896 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0707 1 155 Cytoplasmic Ribosomal Protein Gene Family AT2G39460 85.806 7.34e-69 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0707 K02893 - vvi:100246504 282.722