Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0698 ATGAACAAGGGCTTTTGGATGGCAAAGGGTGTTGGTTGTGTTACTGATGGTGAGATGGCATACGATAATCCTTCGAGAATTGAGCCAAAGCGTTCACATCAGTGGTTCATGGATGGTACGGAGGAGCTATTTCCAAACAAGAAGCAAGCCGTAGAAGTTCCTAACAGCAACTTGTTTCCAGGACTTTCAAATCCAAACGTTTCTCCGTGGGCAAATGCTTCTGGTTTTCACTCAGTCTCAGGTCATTTCACTGAACGGCTATTTGACCCTGAAGCAGCAAGAACTGTCAATTTTGATGACAGGAACATTCCATCAGTTGGTGCAGGAAATATGAACATGGCAAGAAAAGTTATTGAGGATCCTTTTGGGAATGAATCCTTATTTGGTTTATCTATGTCTCATTCACTGGAAGATCCTAGATCAGGTCTTAATTATGGTGGGATCAGGAAAGTTAAAGTCAGTCAAGTGAAGGACTCTGAGAATATTATGTCTGTATCAATGGGACATACCTATACTAGGGCGGATAACAATACCATGTCAATGGCTCATGCATACAACAAGGGAGATGGCAATTCAATATCAATGGGTCTTACTTATAACAAAGGGGATGATAACATCCTATCAATAAGTGACAGTTATGGCAGGGAAGACAACAATTTCATATCAATGGGCCAAGCTTATAACAAGGGGGATGAAAATATAGCGATGAGCCATACCTACAAGGTGAATAATAATACCATATCTATGGGTGACGCATTCGGAAAGAGTGATGACAATGTCATATCTATGGGTCAAACATACAAGGGGGATGATAATACCATATCAATGGGTCAAACGTTCAACAAGGCTGATAACAGTATAATGTCCATGGGTCATACCTACGATAAGGGGGGTGACAATACGATTTCAATGGGTCACACATTCAGCAAAGGAGACAACAATATCATATCTATGGGTCAAACCTACAACAAGGGGGATGACAATACCATATCAATGGGGCACATCTATAATAAAGGAGATGAGAATACCATATCAATGGGTCACACCTACAAGGGTGATAATAGTAATTTGTCTATTGGTCATTCTTATAACAAGGGAGAGAGTAATATAATATCTTTTGGTGGTTTCCATGATGATGATGATGATACAAATCCCTCTGGGAGGCTTGTATGCAGTTATGACTTGTTGATGGGTCAGCCATCGGTTCAAAGGTCTGAGGCATTAAATGAGAAAAAATTGGTTGAGTCAAATGCTGATGCGCTCATAAGTACTGCTCAGATAACTGCCTCCGGATCTGAGACTGTTTCTAAGAAGAAAGAAGAGCAAAAACTGTCTAAGAAGGTTCCTCCAAATAACTTCCCTTCAAATGTCAGAAGTTTGCTATCCACTGGTATGCTGGATGGAGTTCCAGTGAAGTACATTGCCTGGTCACGGGAGGAACTCCGAGGTATTATAAAAGGTTCTGGATATCTCTGTGGTTGTCAGTCATGCAATTTCTCTAAGGTAATTAATGCTTACGAGTTTGAGCGACATGCTGGTTGCAAGACAAAACACCCCAACAATCACATATACTTTGAGAATGGAAAGACTATCTATGGGATTGTCCAAGAGCTTAAAAGCACCCCACAGAATTCGTTGTTTGATGTTATTCAGACAATTACTGGTTCACCTATTAACCAGAAGTCCTTCCGTCTTTGGAAAGAATCCTTTCTGGCTGCAACTCGTGAACTTCAGCGTATATATGGAAAAGAAGAAGGGAAGCAATTGTCATGA 1773 0.4067 MNKGFWMAKGVGCVTDGEMAYDNPSRIEPKRSHQWFMDGTEELFPNKKQAVEVPNSNLFPGLSNPNVSPWANASGFHSVSGHFTERLFDPEAARTVNFDDRNIPSVGAGNMNMARKVIEDPFGNESLFGLSMSHSLEDPRSGLNYGGIRKVKVSQVKDSENIMSVSMGHTYTRADNNTMSMAHAYNKGDGNSISMGLTYNKGDDNILSISDSYGREDNNFISMGQAYNKGDENIAMSHTYKVNNNTISMGDAFGKSDDNVISMGQTYKGDDNTISMGQTFNKADNSIMSMGHTYDKGGDNTISMGHTFSKGDNNIISMGQTYNKGDDNTISMGHIYNKGDENTISMGHTYKGDNSNLSIGHSYNKGESNIISFGGFHDDDDDTNPSGRLVCSYDLLMGQPSVQRSEALNEKKLVESNADALISTAQITASGSETVSKKKEEQKLSKKVPPNNFPSNVRSLLSTGMLDGVPVKYIAWSREELRGIIKGSGYLCGCQSCNFSKVINAYEFERHAGCKTKHPNNHIYFENGKTIYGIVQELKSTPQNSLFDVIQTITGSPINQKSFRLWKESFLAATRELQRIYGKEEGKQLS* 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0698 590 SUPERFAMILY Porins 165 387 - -
Vvi8g0698 590 PANTHER AUTOIMMUNE REGULATOR 5 537 - -
Vvi8g0698 590 MobiDBLite consensus disorder prediction 431 450 - -
Vvi8g0698 590 Pfam Tify domain binding domain 483 538 IPR032308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0698 Vvi-Chr8 13555304 13560776 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0698 443 570 PHD Transcription Factor Family AT3G53680 55.814 3.10e-41 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0698 - - vvi:100251629 1197.96