LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi8g0694	ATGTATAAAAAGGGTAAAGGTTTCCGTCTCATGAGTCTCCGAGGCCAAAGCCCTACGATTCATCTTCTTCCCAGCGGCGGCAGCCTCCACCAATCTCCAGGTTCGATCCCAACCCGTCTCCCTTCCAAGATCAAGGGATCTTCAACTGTGTTTTTTCCCTTTTTGCAGCCTTTCTTTGCAAGGATGGTGAGAGTCAGTGTCTTGAATGATGCTCTAAAGAGCATGTATAATGCAGAGAAGCGGGGAAAGCGACAGGTTATGATCAGACCTTCCTCGAAAGTTATTGTCAAGTTTCTTCTGGTTATGCAGAAGCACGGATATATCGGTGAATTTGAGTATGTAGATGATCACAGATCAGGAAAAATTGTGGTTGAGCTGAATGGAAGGTTGAACAAGTGTGGTGTCATTAGTCCTCGTTTTGATGTTGGTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAGTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAAGCTAGGAGAAAAAATGTTGGTGGCAAAGTTCTTGGTTTCTTTTACTAG	576	0.441	MYKKGKGFRLMSLRGQSPTIHLLPSGGSLHQSPGSIPTRLPSKIKGSSTVFFPFLQPFFARMVRVSVLNDALKSMYNAEKRGKRQVMIRPSSKVIVKFLLVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKDIEPWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY*	192

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi8g0694	191	Gene3D	-	62	130	-	-
	Vvi8g0694	191	SUPERFAMILY	Ribosomal protein S8	65	191	IPR035987	GO:0003735\|GO:0005840\|GO:0006412
	Vvi8g0694	191	Pfam	Ribosomal protein S8	68	191	IPR000630	GO:0003735\|GO:0005840\|GO:0006412
	Vvi8g0694	191	Hamap	30S ribosomal protein S8 [rpsH].	63	191	IPR000630	GO:0003735\|GO:0005840\|GO:0006412
	Vvi8g0694	191	ProSitePatterns	Ribosomal protein S8 signature.	161	178	IPR000630	GO:0003735\|GO:0005840\|GO:0006412
	Vvi8g0694	191	FunFam	40S ribosomal protein S15a	62	130	-	-
	Vvi8g0694	191	PANTHER	40S RIBOSOMAL PROTEIN S15A	62	190	IPR000630	GO:0003735\|GO:0005840\|GO:0006412
	Vvi8g0694	191	Gene3D	-	131	191	-	-
	Vvi8g0694	191	FunFam	40S ribosomal protein S15a	131	191	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi8g0694	Vvi-Chr8	13523798	13527159	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi8g0694	62	191	Cytoplasmic Ribosomal Protein Gene Family	AT5G59850	96.154	2.00e-91	261

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi8g0694	K02957		-	vvi:100258124	262.307