Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0684 ATGGGGAGGAAAGGGAACTGGCTTTCTTCCGTAAAGAAGGCTCTCAGCCCAGAACCCAAGGAGAAGAAGGACCAGAGAGCAGATAAATCCAAGAAGAAATGGTTTGGGAAGCACAAATATCCAGATCCTAATCCTTCCTCTTTAGAAACTGTTCCAGGGCCTTCTCTTGCTCCTCCTGAAGAGGTGAAAACAATCGAACCTGATAATGAACATCACAAGCATGTTTACTCTGTTGCAGCCACAACTACCATGGCTTCCCTTGATGTTCCTGAGACTGATGTGGAGGTTGTTGAAATCACCACTCTGACTCAGTCAACGGGAAAAGCAAAAGAGGAAGCAGCAGCAATCAAGATTCAAACAGCATTCCGAGGTTATTTGGCAAGGAGGGCATTACGGGCTTTAAGAGGGCTGGTCAGGTTGCAATCACTGATACAAGGGACCGCTGTTAAACGCCAAGCTGCAAACACTCTACGGTGCATGCAAACTCTTGCTCGTGTGCAGTCTCAGATCTGTTATAGGAGGATCAGGATGTCTGAGGAGAATCAGGCTCTCCAGAGACAACTCCTACAGAAACAGGCAAAAGAGTTTGAGCAGTTGAAGATGGGGGAGGAATGGGATGACAGCCTACAATCAAAAGAACAAATTGAAGCAGGCCTATTAAACAAGCAAGGGGCAGCAATGAGAAGAGAAAGGGCACTGGCTTATGCATTTTCTCATCAGCAAGCGTGGAAGAATTCTTCAAAGTCCACAAACCTATTGTTCATGGATCCAAGCAACCCCCATTGGGGTTGGAGCTGGTTGGAACGATGGATGGCGGCCCGGCCATGGGAGAGCCGCAGCACAACAGATAAAGAACTCAATAACGACCAATTATCCATAAAAAGTGGAAGCCGCAGCATCACTGGAGGAGAAATCACCAAAGCTTATGCTCGCCACCTGCTGGATTCCAGTAAGCCTTCACCAACTGCAAGCCAAAAACCATACCATCCTCCTGCCCGCCAGTCCCCTTCTACCCCCCCTTCCAAGGCAGTTTCTTCCTCATCGGCAGCTGGAAAATTTAAGCCTGCAGCAAGCCCAAGGGGGAATCTGTGGGGTCAGGATGATGACACAAAGAGCATGGTCAGCATTCAGTCGGAGCGGTTTCGGAGGCATAGCATTGCAGGGTCATCAGTGGGAGATGATGAGAGTCTGGCAAGCTCCCCAGCGGTTCCAAGTTACATGGCACCCACCAAGTCAGCTAAGGCCAAGTCACGATTGCAAAGCCCATTGGGGTTGGAGAATAATGGGACACCGGAAAAGGGCTCATCAGGAATCGCAAAGAAACGGCTTTCTTTTCCAGCTTCACCGGCCAGGCCAAGGCGACATTCAGGTCCACCAAGGGTGGAGAGCAGTTCCCTTACAGAGGGCATTGTGAGCAATGGAGGGGGGACAGTTAGTTAA 1440 0.4972 MGRKGNWLSSVKKALSPEPKEKKDQRADKSKKKWFGKHKYPDPNPSSLETVPGPSLAPPEEVKTIEPDNEHHKHVYSVAATTTMASLDVPETDVEVVEITTLTQSTGKAKEEAAAIKIQTAFRGYLARRALRALRGLVRLQSLIQGTAVKRQAANTLRCMQTLARVQSQICYRRIRMSEENQALQRQLLQKQAKEFEQLKMGEEWDDSLQSKEQIEAGLLNKQGAAMRRERALAYAFSHQQAWKNSSKSTNLLFMDPSNPHWGWSWLERWMAARPWESRSTTDKELNNDQLSIKSGSRSITGGEITKAYARHLLDSSKPSPTASQKPYHPPARQSPSTPPSKAVSSSSAAGKFKPAASPRGNLWGQDDDTKSMVSIQSERFRRHSIAGSSVGDDESLASSPAVPSYMAPTKSAKAKSRLQSPLGLENNGTPEKGSSGIAKKRLSFPASPARPRRHSGPPRVESSSLTEGIVSNGGGTVS* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0684 479 MobiDBLite consensus disorder prediction 315 479 - -
Vvi8g0684 479 Coils Coil 174 194 - -
Vvi8g0684 479 PANTHER IQ-DOMAIN 5-RELATED 1 458 - -
Vvi8g0684 479 SMART iq_5 110 132 IPR000048 GO:0005515
Vvi8g0684 479 Pfam Protein of unknown function (DUF4005) 397 452 IPR025064 -
Vvi8g0684 479 MobiDBLite consensus disorder prediction 1 66 - -
Vvi8g0684 479 MobiDBLite consensus disorder prediction 15 39 - -
Vvi8g0684 479 MobiDBLite consensus disorder prediction 414 434 - -
Vvi8g0684 479 MobiDBLite consensus disorder prediction 460 479 - -
Vvi8g0684 479 ProSiteProfiles IQ motif profile. 111 139 IPR000048 GO:0005515
Vvi8g0684 479 MobiDBLite consensus disorder prediction 317 331 - -
Vvi8g0684 479 Pfam IQ calmodulin-binding motif 113 132 IPR000048 GO:0005515
Vvi8g0684 479 MobiDBLite consensus disorder prediction 338 352 - -
Vvi8g0684 479 MobiDBLite consensus disorder prediction 279 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0684 Vvi-Chr8 13436419 13440742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0684 1 477 IQD Protein Family AT5G03040 52.016 1.60e-145 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0684 - - vvi:100255106 892.108