Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0679 ATGGAGAAAGGCACCTCTTTTCTGTTCTCCGGCATTACTTTCGACAAAAAGAAGTTCGCCGCCGATTTCTCCAGGTTTAAGGAGAAAAAAGAGAGTGATGATTTGGTTGAGAGTGGGAAATCTGAAGCAGAGGAGGGGGCAAGGCCTGTGAAGAAGAGGAAGCGGAAGGCAACGGTTGCGGATCCTGTAGAAGGATTCAATGTCTTCAAGACTTCAAAATCATCCGCTCAAGGAATCCAGCAGAATGACCAGGAAAAAAGCGAACTTTCTCAAGCAAAGAAGGAACTCAATCGGCAAATTGAGAGGGATGCGCTTTTGCGGAAGAAGCATAAGATTCATATTTCTGGAAATAATGTTCCATCTCCCTTGGAGAATTTTTCAGAGTTGAGCTCAAGATATGGATGTGAATCATATTTATTGCACAACTTGGCGGAACTTGGATTTAAAGAGCCAACACCAATTCAAAGACAGGCTATTCCAGTACTACTATCTGGACGCGAATGCTTTGCTTGTGCTCCTACTGGATCTGGAAAAACCTTGGCTTTTGTGTGTCCAATGCTTATGAAACTTAAGCATGCATCAAAGGATGGCATCCGGGCTGTTATCCTTTGTCCTACAAGGGAGCTAGCTGCTCAGACAGCCAGAGAGTCCAAGAAATTGGCTAAAGGGAAGAAATTTTACATCAAGTTATTGACTAAAGAACTTTTAAGAAGTGGTGATATTTCAAAACTGCCTTGTGATATACTCATATCTACACCTCTGCGCCTGCGGTCTGCTATCCGCAAAAAAAAGCTCGATTTAAGCAGGGTTGAGTATCTTGTCCTGGATGAATCAGATAAACTGTTTGAGCTTGGCTTGGTGAAGCAGATTGATGCCGTGGTCAAAGCATGCTCAAATCCCTCAATAATACGCTCATTGTTTAGTGCTACTTTACCTGATTTTGTTGAAGAGCTTGCTCGCACAATAATGCATGATGCTGTTCGAGTCATCATTGGCAGGAAGAATTCTGCTTCTGAACTTATAAAGCAAAAACTGGTGTTTGCTGGAAGTGAAGAGGGGAAGCTTCTTGCTCTTCGTCAAAGCTTTGCAGAGAGTTTGAATCCACCGATTCTTCTCTTTGTCCAAAGCAAGGAACGTGCAAAGGAGCTCTACACGGAACTGGCATTTGATGACATTAGAGTTGATGTTATCCATGCTGATTTGTCCCAATCACAGCGAGAAAATGCTGTGGATGACTTCAGAGCCGGGAAAACTTGGGTTTTGATTGCAACTGATGTTATTGCTCGTGGTATGGATTTCAAAGGCATTAACTGTGTGATTAATTATGACTTTCCAGATTCTCCTGCTGCATATATTCACAGGATTGGTCGTTCTGGCAGAGCAGGAAGGACAGGAGAGGCTATTACCATTTACACAGAAGATGATGTTCCATTTTTGCGGAACATTGCAAATGTGATGGCAGCTTCTGGCTGTGAGGTTCCGTCTTGGATTATGGCCTTGCCCAAACTGAAGTGGAAGAAGCATCGGCCCCAAAGAGATTCTATATCCACAAAGCCAAAAGATCAGAAAGAGTAA 1575 0.4311 MEKGTSFLFSGITFDKKKFAADFSRFKEKKESDDLVESGKSEAEEGARPVKKRKRKATVADPVEGFNVFKTSKSSAQGIQQNDQEKSELSQAKKELNRQIERDALLRKKHKIHISGNNVPSPLENFSELSSRYGCESYLLHNLAELGFKEPTPIQRQAIPVLLSGRECFACAPTGSGKTLAFVCPMLMKLKHASKDGIRAVILCPTRELAAQTARESKKLAKGKKFYIKLLTKELLRSGDISKLPCDILISTPLRLRSAIRKKKLDLSRVEYLVLDESDKLFELGLVKQIDAVVKACSNPSIIRSLFSATLPDFVEELARTIMHDAVRVIIGRKNSASELIKQKLVFAGSEEGKLLALRQSFAESLNPPILLFVQSKERAKELYTELAFDDIRVDVIHADLSQSQRENAVDDFRAGKTWVLIATDVIARGMDFKGINCVINYDFPDSPAAYIHRIGRSGRAGRTGEAITIYTEDDVPFLRNIANVMAASGCEVPSWIMALPKLKWKKHRPQRDSISTKPKDQKE* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0679 524 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 128 156 IPR014014 GO:0003724
Vvi8g0679 524 Pfam DEAD/DEAH box helicase 152 317 IPR011545 GO:0003676|GO:0005524
Vvi8g0679 524 SMART ultradead3 147 344 IPR014001 -
Vvi8g0679 524 Pfam Helicase conserved C-terminal domain 357 462 IPR001650 -
Vvi8g0679 524 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 44 498 - -
Vvi8g0679 524 CDD SF2_C_DEAD 341 471 - -
Vvi8g0679 524 CDD DEADc_DDX52 139 332 IPR044764 GO:0003724|GO:0005524|GO:0030490
Vvi8g0679 524 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 357 501 IPR001650 -
Vvi8g0679 524 Gene3D - 67 328 IPR027417 -
Vvi8g0679 524 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 159 329 IPR014001 -
Vvi8g0679 524 Gene3D - 329 503 IPR027417 -
Vvi8g0679 524 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 482 IPR027417 -
Vvi8g0679 524 Coils Coil 79 102 - -
Vvi8g0679 524 SMART helicmild6 381 462 IPR001650 -
Vvi8g0679 524 MobiDBLite consensus disorder prediction 29 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0679 Vvi-Chr8 13402695 13409717 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0679 122 494 Eukaryotic Initiation Factors Gene Family AT3G19760 32.000 7.71e-56 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0679 K14779 - vvi:100267132 1025.39