Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0666 ATGGGGCATAGACATCTGTATAACACATCTCAAATGTTTGAGGGTGACCACGATCAGACATGGAATCATATGAATGCTGATCAGCCTTACTTGGCCAGGGCTGGTGTTGCAGAAAATGTCTCTCTTATTTATCCTGTGGAAAATATGACGATAGATGGTGGACATTATTCTTCTCATTGGAACCCCCCACCAAGGCCAAATGTTTATTCTTCCTCAGGTCACAATGTTGAAGTGCCTCATTATCAACAAGACGCTCTTGGCCCGTCCCGTGATCCTTTTCTACATCTGCCTGCTGCTGGAACATTCCCTATGGGCCCAGAAAATTATGCTCACCATGCATCCTCTTCCAATTATGATAGGCAGACGTTCCATGGGATGGACAATGGTTTTGTTGATCTTACAATGGGTAATGGAAGAGGGCCATACAAACGAAAAAGCCCTGGAATCCCTTCTGTCTTTGAGAGAGGTAGCACAAGCAGATTTTACAGTGCTGGAAGTTCCTCGGATCTCTCTGTATCTGCTGACTTGCGGCAGGAGAAGCCAAATGCAGATTCTCAAAATATGCCATGGGATCACATCAACATGAGCCCTGGTTATAGAGGCAGTGGCCTCTCAATTGGGGGTGAGGGTTCTCTCAGGAATGTAAGAAGCCGGTCTGCACTTGACTTGGAATCCAACCTAGCTAGGACACATTTATCAGGCAATCCTTCACGTCATTCATATTCAGCTAGCCATCCCATGGATTATTCTAGTTCAGTGGATCTCTCCAGTCAGAGTTCTAATTCTTCATCACGGGAGTGGAACCATATCTTGTCTCCTGCACATGGAAGAACTCCAGTTTCGGACACCAGTGGTTTAAGTCATGAAACAAATCACTTCCCTTTAGGTAGCTGTACTACTAATGCTCCTGTGGAGTTTGGGGGATACAATCATGATTTCATTCCGAGCAGAAACCCTATTGTTCCTCAAAGTTTGCATGGTACCTCGAATCAATCTGTGAGGGGAGTTCGAACCAGTTATTCCCAACGATCTACCCCAACGTCCCGGGCTTCTTCAAGCAACTCACGCCTGGGACATCCAACTACTGATGAGGGTTTGCAATTGGTAGCTGAAAATTATTCCTCCAGACATTCGAGGCCATTTTCTACTGTAGGGTGGCGTAACAGTGATAGGAATGGAAGATCAAGGATATCAAATGAGAGATTCCGATCACTCTCTGATGAGGCAGGTGTCCGTGAGCGACTGGCATCTGAGGGACTAATGATTGTGGATCGCTCAGCCTTGTATGGGTCAAGAAATTTGTTTGATCAGCACAGAGAGATGAGACTGGATGTAGACAATATGAGCTATGAGGAACTGCTTGCGCTAGGGGAAAGGATTGGGAATGTCAACACAGGCTTGTCTGAAGATATGATGTCAAAGTGCTTGACCGAAACAATATATTGTTCATCTGATCAACTCCAGGAGGAAGGGGCATGTGTAATCTGTCTGGATGAGTACAAGAACATGGATGATGTTGGGACACTGAGCGCATGCCGCCATGATTACCATGTGGACTGCATCAAGAAATGGTTATTGATGAAGAACTCATGCCCAATTTGCAAAGCTCCTGCTCTGCCTGACCATATGAAGGGAATATAA 1641 0.4558 MGHRHLYNTSQMFEGDHDQTWNHMNADQPYLARAGVAENVSLIYPVENMTIDGGHYSSHWNPPPRPNVYSSSGHNVEVPHYQQDALGPSRDPFLHLPAAGTFPMGPENYAHHASSSNYDRQTFHGMDNGFVDLTMGNGRGPYKRKSPGIPSVFERGSTSRFYSAGSSSDLSVSADLRQEKPNADSQNMPWDHINMSPGYRGSGLSIGGEGSLRNVRSRSALDLESNLARTHLSGNPSRHSYSASHPMDYSSSVDLSSQSSNSSSREWNHILSPAHGRTPVSDTSGLSHETNHFPLGSCTTNAPVEFGGYNHDFIPSRNPIVPQSLHGTSNQSVRGVRTSYSQRSTPTSRASSSNSRLGHPTTDEGLQLVAENYSSRHSRPFSTVGWRNSDRNGRSRISNERFRSLSDEAGVRERLASEGLMIVDRSALYGSRNLFDQHREMRLDVDNMSYEELLALGERIGNVNTGLSEDMMSKCLTETIYCSSDQLQEEGACVICLDEYKNMDDVGTLSACRHDYHVDCIKKWLLMKNSCPICKAPALPDHMKGI* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0666 546 MobiDBLite consensus disorder prediction 227 266 - -
Vvi8g0666 546 SMART ring_2 493 534 IPR001841 -
Vvi8g0666 546 ProSiteProfiles Zinc finger RING-type profile. 493 535 IPR001841 -
Vvi8g0666 546 MobiDBLite consensus disorder prediction 321 362 - -
Vvi8g0666 546 Pfam Ring finger domain 492 535 IPR001841 -
Vvi8g0666 546 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 458 539 - -
Vvi8g0666 546 CDD RING-H2_RNF24-like 491 538 - -
Vvi8g0666 546 SUPERFAMILY RING/U-box 483 540 - -
Vvi8g0666 546 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 458 539 IPR013083 -
Vvi8g0666 546 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 139 539 IPR045191 GO:0061630
Vvi8g0666 546 MobiDBLite consensus disorder prediction 317 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0666 Vvi-Chr8 13268964 13272217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0666 1 544 C3H Transcription Factor Family AT2G37150 44.865 1.19e-126 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0666 - - vvi:100263731 1087.4