LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi8g0663	ATGACCGTGATCGACATTCTCACCAGAGTCGACGCGATCTGCAAGAAATACGACAAGTACGACATCGACAAGCAGAAGGATCTCAATGTCTCCGGCGATGATGCCTTCGCTCGTCTTTACGCCGTCGTTGAAGCCGACATCGAGGCCGCTCTTCAGAAAGCAGATACTGCATCTAACGAGAAAAATAGAGCGTCTGCGGTTGCTTTGAACGCCGAGATTCGTCGGACCAAGGCTCGATTGCTGGAGGAGGTCCCTAAGTTGCAGAGACTGGCTATAAAGAAGGTTAAAGGGCTTTCAACAGAAGAACTTGCTGCTCGTAATGATTTGGTCCTTGCATTGCCGGATAGGATCCAAGCAATACCAGATGGGGCTGCAACTGCACCCAAACAAACTGGAGGTTGGGCAGCTTCAGCTTCTCGTACAGAAATCAAATTTGATTCAGATGGACGATTTGACAGTGAATACTTCCAACAAACTGAAGAGTCTAGTCAGTTCAGGCAAGAGTATGAAATGCGGAAAATGAACCAAGACCAAGGTTTGGATGTGATAGCAGAAGGTTTGGACACATTGAAAAACATGGCCCATGATATGAATGAGGAATTGGATCGGCAAGTTCCTTTGATGGATGAGATCGACACCAAGGTGGACAAAGCAACAGCTGACCTCAAGAATACTAATGTTAGACTTAAGGACACTGTTAACCAGCTGAGGTCCAGTCGAAATTTCTGCATTGATATTATTTTGTTGTGTATAATTCTGGGAATTGCTGCCTATCTATATAATGTATTGAAGAAGTGA	798	0.4511	MTVIDILTRVDAICKKYDKYDIDKQKDLNVSGDDAFARLYAVVEADIEAALQKADTASNEKNRASAVALNAEIRRTKARLLEEVPKLQRLAIKKVKGLSTEELAARNDLVLALPDRIQAIPDGAATAPKQTGGWAASASRTEIKFDSDGRFDSEYFQQTEESSQFRQEYEMRKMNQDQGLDVIAEGLDTLKNMAHDMNEELDRQVPLMDEIDTKVDKATADLKNTNVRLKDTVNQLRSSRNFCIDIILLCIILGIAAYLYNVLKK*	266

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi8g0663	265	ProSitePatterns	Syntaxin / epimorphin family signature.	176	215	IPR006012	GO:0005484\|GO:0006886\|GO:0016020
	Vvi8g0663	265	Coils	Coil	40	67	-	-
	Vvi8g0663	265	PANTHER	SYNTAXIN	46	252	IPR045242	-
	Vvi8g0663	265	SUPERFAMILY	SNARE fusion complex	165	230	-	-
	Vvi8g0663	265	FunFam	Putative syntaxin-71-like	170	231	-	-
	Vvi8g0663	265	SMART	tSNARE_6	165	232	IPR000727	-
	Vvi8g0663	265	CDD	SNARE_Qc	176	230	-	-
	Vvi8g0663	265	ProSiteProfiles	t-SNARE coiled-coil homology domain profile.	170	232	IPR000727	-
	Vvi8g0663	265	Coils	Coil	215	235	-	-
	Vvi8g0663	265	Gene3D	-	170	231	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi8g0663	Vvi-Chr8	13239904	13250981	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi8g0663	1	264	SNARE and Associated Proteins	AT3G09740	79.323	4.05e-160	443

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi8g0663	K08506		-	vvi:100258582	496.893

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