Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0662 ATGGACACACAACTCAGCTCAAATATTCAACTTCAACTTCCCCCTGGTTTCAGATTCCACCCATCAGATGAAGAGCTCATTATCCACTATTTGAGGAACAAAGCAACTTCAAGTCCAATTCCAGCATCGATTATTGCTGAAGTAGATCTTTATAAGTACAACCCATGGGAGCTACCAACCAAAGCTTTGTTTGGACAGGATGAATGGTATTTCTTTACACCAAGAGATAGGAAGTATCCAAATGGAGTGAGGCCTAATAGAGCAGCAGCTTCAGGTTACTGGAAGGCTACTGGGACCGATAAACCAATTCTCACTTCCTGCGGAACAAGGAGCATTGGGGTCAAGAAAGCTCTCGTGTTCTACAAAGGGCGCCCTCCAAAGGGAGTTAAGACGGACTGGATCATGCATGAGTATAGACTACTCGATTCAATGTTTCGGACTTTGAAACATAAAGGGTCCATGAGATTGGATGATTGGGTACTGTGTCGGGTCCGGCAGAAGAGCAGCATCCCAAGGAACATCTGGGAAGATCGAAATGGTCCTAGCAGTGAACCGGCTAGCTACTCCCCAGCAGTGGACAAAGCATGCAATATGACTACAAATTCTAATGTCGAAATGATAAAAAGTTATCTCTACAATGATTGCCCACTGCTACCTTACATCTTTGCCTCTCAAGATTTTTCAGCCATAAGCTTTGAAGGTAGAAATAAGGGAAAATTTTACTCTTCAGTCTGCAGCGAGAACAATTCAGATCAAAAGAATTTGCTAGTTTCAGTTTCTTCTTCCAACAGCTTGTTCAACCCACAAAAGAGAAAGCCTATTGAAGGAAATCAGTATGAGGGTTTCCTTCCACCTAGCAAGAAGCTAAACAACAGGGATGATAAGGACAAATTCCTACTATCTGTTGATAGTACAGAAATGAATTGCAGTAGAACAGAAGAGTCTGAAGACAACAATTTCACTGCTGATCAATGGGATTCCATCACCCAATATCAAGAGCTTAATTACTTGGCCTTCACAGAGAGTTAA 1029 0.4218 MDTQLSSNIQLQLPPGFRFHPSDEELIIHYLRNKATSSPIPASIIAEVDLYKYNPWELPTKALFGQDEWYFFTPRDRKYPNGVRPNRAAASGYWKATGTDKPILTSCGTRSIGVKKALVFYKGRPPKGVKTDWIMHEYRLLDSMFRTLKHKGSMRLDDWVLCRVRQKSSIPRNIWEDRNGPSSEPASYSPAVDKACNMTTNSNVEMIKSYLYNDCPLLPYIFASQDFSAISFEGRNKGKFYSSVCSENNSDQKNLLVSVSSSNSLFNPQKRKPIEGNQYEGFLPPSKKLNNRDDKDKFLLSVDSTEMNCSRTEESEDNNFTADQWDSITQYQELNYLAFTES* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0662 342 PANTHER NAC TRANSCRIPTION FACTOR 56 13 224 - -
Vvi8g0662 342 FunFam NAC transcription factor 22 170 - -
Vvi8g0662 342 ProSiteProfiles NAC domain profile. 13 167 IPR003441 GO:0003677|GO:0006355
Vvi8g0662 342 Gene3D NAC domain 22 170 IPR036093 GO:0003677|GO:0006355
Vvi8g0662 342 MobiDBLite consensus disorder prediction 267 286 - -
Vvi8g0662 342 Pfam No apical meristem (NAM) protein 14 140 IPR003441 GO:0003677|GO:0006355
Vvi8g0662 342 SUPERFAMILY NAC domain 8 167 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0662 Vvi-Chr8 13224257 13225775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0662 12 176 NAC Transcription Factor Family AT1G61110 67.630 2.52e-84 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vvi8g0662 NAM 1.5e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0662 - - vvi:100248298 706.827