Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0661 ATGCAAATGATGTCTGGCGATATGTTCTCCATCCCCTCTTCCATCAGAACCTTTGCTCAAGACCCAGATGCAAACCCTAATAATCTTAAACCTCCGCCCAAGAAGAAGAGAAATCTACCTGGAACCCCAGATCCAGATGCGGAGGTTATTGCTCTTTCACCAAAGACTCTCATGGCCACCAATCGATTCATATGTGAAATCTGCAATAAAGGGTTTCAGAGAGACCAGAACCTGCAACTGCACCGAAGAGGACACAATCTTCCATGGAAGCTCAAGCAAAGGTCGAACAAAGAGGTTCGAAAGAAGGTTTACATCTGCCCCGAGAAGACCTGCGTTCACCACGACCCCTCCAGAGCCCTCGGCGACCTTACTGGGATAAAAAAACATTTCAGTAGAAAACATGGCGAGAAGAAGTGGAAGTGCGAGAAGTGTTCTAAGAAATACGCAGTTCAATCTGACTGGAAAGCTCACTCGAAAACTTGCGGAACCAGGGAGTACAAATGTGACTGTGGAACACTCTTTTCCAGGAAAGATAGCTTCATTACGCATAGGGCTTTCTGTGATGCCTTGGCTGAAGAGCGTGCTAGAATCACTTCTGTTGCAGCCACCAATCTAAATTTCAGAAACGATTCCATGAATGAGACGGTGATTAATCCTCAACCCGGTTTGTTGAATGGATTTTCCGGACGGGGAGGTCCAGATGCGGCCGGAATTTCTCAATTTTGCCCAGGTTTTGGACCAGATTTAACAGGTTTGCCTGAGATGGTGCAAGTGGCAGCATCAAATCTGTTTGGCTCCTCTTCTGTAGGTAATTTCGGAAGCTGCAACGAGTCCCCTTGGCTGGACAAGAGTTCTGCAACGTCAAATGGTGCAAATCTCTCACTGGCATCTCTCCCACATGCTTTAAAGGAAGAAGAAGGGAACAAAGGAAGCATGGTGGAAACCCTAACTTCTCTCTATTCCGGTAACCACAGCCAGCAGTCAAGTCCCGCAGCTCCCATGTCAGCCACTGCTCTCTTGCAGAAAGCTGCTCAGATGGGTTCCACAAGAAGCAACCCATCCTTCTTCGGTAACAGCTTTGGAGTGATGAACTCATCTGGTTCCCATTCAACCACCCTCAATACTCTCACTCACAATAGAAACGAGCTGCACCAAGTTTTCGGGACGGGTAAACAACATGAGAATTTAATGGCGACTGCCTCATTGAGTGAAGGCGTACTGGCGGGTTCAGGCTTGAGCTCATTGACAAGTACCTCAAACAATCTTGCTCAGATGATGATGCAGACAAGTGGAAAACAAACCGAACCAGTTCCATTGAAGCTTCATCTAGGCTCAAACAGTGTGGAAAATAGCCTCACCAGGGATTTCCTGGGGATGGGAGGAGGTGAATCAGGTCGTCCATTCTTGCCCCAAGAGCTAGCCAAATTTGCTTCAATGGGCTCAGCCATGGGGTTGAGCCATTTCACCAGCAACCATTGA 1479 0.4767 MQMMSGDMFSIPSSIRTFAQDPDANPNNLKPPPKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVRKKVYICPEKTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEERARITSVAATNLNFRNDSMNETVINPQPGLLNGFSGRGGPDAAGISQFCPGFGPDLTGLPEMVQVAASNLFGSSSVGNFGSCNESPWLDKSSATSNGANLSLASLPHALKEEEGNKGSMVETLTSLYSGNHSQQSSPAAPMSATALLQKAAQMGSTRSNPSFFGNSFGVMNSSGSHSTTLNTLTHNRNELHQVFGTGKQHENLMATASLSEGVLAGSGLSSLTSTSNNLAQMMMQTSGKQTEPVPLKLHLGSNSVENSLTRDFLGMGGGESGRPFLPQELAKFASMGSAMGLSHFTSNH* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0661 492 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 85 IPR013087 -
Vvi8g0661 492 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 25 471 IPR031140 -
Vvi8g0661 492 MobiDBLite consensus disorder prediction 1 47 - -
Vvi8g0661 492 SUPERFAMILY beta-beta-alpha zinc fingers 62 159 IPR036236 -
Vvi8g0661 492 ProSitePatterns Zinc finger C2H2 type domain signature. 65 85 IPR013087 -
Vvi8g0661 492 SMART c2h2final6 63 85 IPR013087 -
Vvi8g0661 492 SMART c2h2final6 104 134 IPR013087 -
Vvi8g0661 492 SMART c2h2final6 139 159 IPR013087 -
Vvi8g0661 492 Gene3D Classic Zinc Finger 117 196 - -
Vvi8g0661 492 FunFam protein indeterminate-domain 5, chloroplastic-like 117 196 - -
Vvi8g0661 492 Pfam Zinc-finger double-stranded RNA-binding 63 85 IPR022755 -
Vvi8g0661 492 Gene3D Classic Zinc Finger 41 115 - -
Vvi8g0661 492 MobiDBLite consensus disorder prediction 1 24 - -
Vvi8g0661 492 FunFam protein indeterminate-domain 12-like 42 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0661 Vvi-Chr8 13209322 13211193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0661 1 261 IDZ Gene Family AT5G03150 66.330 7.69e-126 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi8g0661 zf-C2H2_jaz 7.2e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0661 K25870 - vvi:100243175 939.488