Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0660 ATGATAAATCTAGAAGCAGGCATGGATGGCGTAGCATGGAGGGGCTTCGTGTACACCATATTCATCCTCAATTTCGTCTTCGCTTGCCAACTCCTCCTCCTCCCTCCCCTCGTCTCTGCCGTTGGTGACAAACCTGGCAATTCTGCAGAGTTGTTTGAGAGAGTTTCACAGAGTGTAAAGGTGAAACGTTATAGTGAGGCACTTGATGATCTTAATGCTGCTATAGAGGCTGACCCAACCCTTTCAGAAGCATATTGGCATCGAGCATCCATTCTACGCCAGATCTGCAGATATGAGGAATCTGAGAAGACCTACAAGAAGTTTCTGGAGCTAAATCCTGGAAATTCAGCAGCAGAAAAGGAACTTTCTCAGTTGTCTCAATCCCAGAGTGCTTTGGATACAGCTTCAAATCTTTTTGAGACAGGAGGCTTTACAAAAGCATTGGATTATATTGACAAGGTTGTACTTGTTTTTTCTCCGGCATGTGCAAAGGCAAAACTGCTGAAGGTGAAGTTATTGTTAGCTGCTAAAGACTACTCGAGTGCCATCTCTGAGACTGGATATATGCTCAAAGAAGATGAGAATAATCTAGAAGCACTATTGCTCCGAGGCCGTGCCTATTATTATTTAGCGGATCATGATGTTGCGATAAGGCATTATCAAAAAGGTCTCCGTCTAGACCCAGAACATGGTGAACTGAAGAAAGCGTATTTTGGTTTGAAAAATTTACTGAAGAAAACTAAAAGTGCAGAAGATAATGTGAATAAGGGTAAGCTGCGTCTTGCAGTGGAGGACTTTAAAGGAGCCCTTTCCCTGGACCCTAATCATCTTGCACATAATGTGCATCTTCATCTTGGTTTATGTAAGGTTTTGGTCCAGCTTGGTAGGGGAAAGGATGCTTTAATTAGTTGCACGGAAGCACTTAACATCGATGAGGATCTCATTGATGCTCTAGTTCAGAGGGGGGAAGCCAAGCTTTTGACAGAAGATTGGGAGGGTGCTGTAGAAGATCTGAAATCAGCAGCTCAAAGATCACCTCAGGATATGAACATTCGAGAAGCACTTATGAGGGCTGAAAAATCTTTGAAGTTGAGCAAACGGAAGGACTGGTACAAGATTTTGGGAGTTTCTAAAACTGCACCTGTATCAGAGATAAAACGTGCTTACAAGAAGCTCGCTTTGCAGTGGCACCCAGATAAGAATGTAGATAATAGAGAAGAAGCAGAGGCACAATTCCGGGAAATAGCTGCTGCATATGAGGTTCTTGGGGATGAAGAAAAACGTACAAGATATGACAGAGGGGAAGACATTGAAGACATGGGTATGGGTGGTGGTGGTGGTGGCGGCTTCAATCCATTTGGTGGTGGTGGACAGCAATTCACATTTCACTTTGAAGGGGGCTTTCCTGGCGGATTCAATTTTTGA 1425 0.4372 MINLEAGMDGVAWRGFVYTIFILNFVFACQLLLLPPLVSAVGDKPGNSAELFERVSQSVKVKRYSEALDDLNAAIEADPTLSEAYWHRASILRQICRYEESEKTYKKFLELNPGNSAAEKELSQLSQSQSALDTASNLFETGGFTKALDYIDKVVLVFSPACAKAKLLKVKLLLAAKDYSSAISETGYMLKEDENNLEALLLRGRAYYYLADHDVAIRHYQKGLRLDPEHGELKKAYFGLKNLLKKTKSAEDNVNKGKLRLAVEDFKGALSLDPNHLAHNVHLHLGLCKVLVQLGRGKDALISCTEALNIDEDLIDALVQRGEAKLLTEDWEGAVEDLKSAAQRSPQDMNIREALMRAEKSLKLSKRKDWYKILGVSKTAPVSEIKRAYKKLALQWHPDKNVDNREEAEAQFREIAAAYEVLGDEEKRTRYDRGEDIEDMGMGGGGGGGFNPFGGGGQQFTFHFEGGFPGGFNF* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0660 474 ProSiteProfiles TPR repeat profile. 197 230 IPR019734 GO:0005515
Vvi8g0660 474 ProSiteProfiles dnaJ domain profile. 369 435 IPR001623 -
Vvi8g0660 474 PANTHER DNAJ PROTEIN P58IPK HOMOLOG 19 472 IPR044620 -
Vvi8g0660 474 FunFam DnaJ domain containing protein 36 366 - -
Vvi8g0660 474 Pfam DnaJ domain 369 432 IPR001623 -
Vvi8g0660 474 Pfam Tetratricopeptide repeat 60 116 - -
Vvi8g0660 474 SUPERFAMILY TPR-like 60 364 IPR011990 GO:0005515
Vvi8g0660 474 PRINTS DnaJ domain signature 427 446 IPR001623 -
Vvi8g0660 474 PRINTS DnaJ domain signature 407 427 IPR001623 -
Vvi8g0660 474 PRINTS DnaJ domain signature 389 404 IPR001623 -
Vvi8g0660 474 PRINTS DnaJ domain signature 371 389 IPR001623 -
Vvi8g0660 474 CDD DnaJ 369 424 IPR001623 -
Vvi8g0660 474 Pfam Tetratricopeptide repeat 198 230 IPR013105 -
Vvi8g0660 474 ProSiteProfiles TPR repeat profile. 82 115 IPR019734 GO:0005515
Vvi8g0660 474 SUPERFAMILY Chaperone J-domain 363 469 IPR036869 -
Vvi8g0660 474 Gene3D Tetratricopeptide repeat domain 38 366 IPR011990 GO:0005515
Vvi8g0660 474 Gene3D DnaJ domain 367 473 IPR036869 -
Vvi8g0660 474 SMART dnaj_3 368 427 IPR001623 -
Vvi8g0660 474 SMART tpr_5 281 314 IPR019734 GO:0005515
Vvi8g0660 474 SMART tpr_5 48 81 IPR019734 GO:0005515
Vvi8g0660 474 SMART tpr_5 197 230 IPR019734 GO:0005515
Vvi8g0660 474 SMART tpr_5 315 348 IPR019734 GO:0005515
Vvi8g0660 474 SMART tpr_5 82 115 IPR019734 GO:0005515
Vvi8g0660 474 ProSitePatterns Nt-dnaJ domain signature. 412 431 IPR018253 -
Vvi8g0660 474 FunFam DnaJ subfamily C member 7 367 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0660 Vvi-Chr8 13199925 13205357 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0660 361 432 C2H2 Transcription Factor Family AT1G74250 43.421 2.73e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0660 K09523 - vvi:100265482 860.907