Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0645 ATGGGAGCTGAAGAGGAGTCGTCTGTTGGCGTGGGAAATAATGGGGGTGCTTGCAACAACACGCTTGATCCTCCAATTCAAAAGGTTGGAATTTCATCTGAAATAATGGAGGAAGCCCCACGTGGTCAACAGCAGAGGCACCAAAACCTCATCTTAGAGATACCCTCAAGGACTCATGAGGGCTCTACTGAGGATTTTGTGAGAATAAACATGCCGCCAACACCAAATAGTACTCCCAAAAGAGTAAATTTTTCGCCAATGCCTAGTCCTAGTTATACCAAAATCAATGTGTCCCCGGGTCCATCACCATCTAAGGGTAGGTCATCCATCAAAAGCCTACTTCCAAAACTAAGTTTCAAATACCGGAGTTCTACTTCCGAGATTGAGAAAGCTGCCATTCTTGCACTTGGAGCTTCTTCAACAGGGACACGAGAGAAGCCTCTAACCCCAAGGACATCGTCTCTTACAAAACTTTTCACACCCAAAATGAAGAGGACATCGTCTTTACCGGTGTCCCCAATTGCTCACTCAAATCCAGAGTCTATGCATGGGGGAAACACAATTGATCTGCTGGATTCTGCTAAAGGAGGATCACTGCTACCTATTCATCGTTCACATTCAGTCCCTGTGATTAACAAAGATGAAAGCATAAGGCAGATGGATTCTTTAGGTGGTGTATTTCGTGTAGTTCCTACTACTCCAAGAGTGGCAGAAGTGACTGTTGCAACAGCAATTGCTAGTCCAACAGTTGATGCTGGTGGAAATGATGATGATGGTGAAGATATTCCTGAAGAAGAAGCGGTTTGTAGAATCTGCATGATCGAACTGGGGGAAGGTGCTGATACCCTTAAGATGGAATGTAGCTGCAAGGGTGAACTTGCACTTGCACACCAAGAATGTGCTGTAAAATGGTTTAGCATCAAAGGTAACAAAACATGCGATGTCTGCAAGCAAGAGGTCCAGAACCTACCTGTCACTCTTTTACGAATTCAAAATGCCCAGGCACTTAACTTGCAAGGAAATAGAGGTCGGCAAGCTGAGGCTACTGGATATAGGGTTTGGCAGGATGTTCCTGTTCTTGTCATTGTCAGCATGCTTGCTTACTTTTGTTTTCTTGAGCAGCTTCTGGTTAGGAAAATGGGTTCTAGTGCGATTGCCATCTCTCTCCCATTTTCCTGCATATTGGGCCTTCTTGCATCCATGACATCAACAACATTGGTAAGAAGAAGGTATGTCTGGGTCTATGCGAGTATTCAATTTGGACTGGTGGTTTTCTTTGCACATATTTTCTATTCACTGTTTCATGTGCAGGCCGTATTATCTGTCCTCCTGGCCACATTTGCTGGATTCGGAGTTACTATGTGCGGGAACTCCTTTGTTGTTGAGTTTTTAAAATGGAGGAGAAGGTGGCTGGCTGGGTCAGATCAACAACACAGTTCTCAGGAGGTGACACAGATGGATGGATCACCTGGAACTGCAAATCCACCACAAACAGGTTCTCCACACCATGAAACTGAAATGGGAAATTCTGGGAATCCACGGGGAAGCTGA 1551 0.4494 MGAEEESSVGVGNNGGACNNTLDPPIQKVGISSEIMEEAPRGQQQRHQNLILEIPSRTHEGSTEDFVRINMPPTPNSTPKRVNFSPMPSPSYTKINVSPGPSPSKGRSSIKSLLPKLSFKYRSSTSEIEKAAILALGASSTGTREKPLTPRTSSLTKLFTPKMKRTSSLPVSPIAHSNPESMHGGNTIDLLDSAKGGSLLPIHRSHSVPVINKDESIRQMDSLGGVFRVVPTTPRVAEVTVATAIASPTVDAGGNDDDGEDIPEEEAVCRICMIELGEGADTLKMECSCKGELALAHQECAVKWFSIKGNKTCDVCKQEVQNLPVTLLRIQNAQALNLQGNRGRQAEATGYRVWQDVPVLVIVSMLAYFCFLEQLLVRKMGSSAIAISLPFSCILGLLASMTSTTLVRRRYVWVYASIQFGLVVFFAHIFYSLFHVQAVLSVLLATFAGFGVTMCGNSFVVEFLKWRRRWLAGSDQQHSSQEVTQMDGSPGTANPPQTGSPHHETEMGNSGNPRGS* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0645 516 SUPERFAMILY RING/U-box 265 320 - -
Vvi8g0645 516 CDD RING_CH-C4HC3_MARCH 269 317 - -
Vvi8g0645 516 SMART ringv_2 268 317 IPR011016 GO:0008270
Vvi8g0645 516 Pfam RING-variant domain 269 316 IPR011016 GO:0008270
Vvi8g0645 516 ProSiteProfiles Zinc finger RING-CH-type profile. 261 323 IPR011016 GO:0008270
Vvi8g0645 516 MobiDBLite consensus disorder prediction 477 516 - -
Vvi8g0645 516 PANTHER OS02G0165000 PROTEIN 33 485 - -
Vvi8g0645 516 MobiDBLite consensus disorder prediction 1 25 - -
Vvi8g0645 516 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 324 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0645 Vvi-Chr8 13035199 13039756 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0645 255 323 C3H Transcription Factor Family AT2G37950 42.857 1.71e-13 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0645 - - vvi:100265508 1006.51