Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0644 ATGGGGAATATCGGAAGTAGCAGCGTGAACGGCCGACGTCGACACGGGAGCAGGCGGAGCCACCCGCCTCCGCCGCCTCCGCAACCGCCACAGCCTGAAATTACTCCAAACCAATACGTGTTCGCGGCGCCTTACCCAACTCAATACCCCAACCCTAACCCTCCCCAGTACTATCAGTACCCGGGTTTCTATCCCCCGCCGCCTGCAGCGATGCCGGTACCGTTGCCGGCTCCGTACGACCATCACCACCGCGGTGGACCTCCGCCGCACATGGACCCTGCCCACGCAAATTTTGTGGCTGGGCGGTACTCTTGTGGTCCTGTTGTTCCTCCCCATGCCCCATACGTTGAGCACCAGAAGGCTGTTACCATTCGCAATGATGTTAATCTCAAGAAGGAGACTTTGCGACTCGAGCCTGATGAGGAACACCCTGGGCGCTTCCTTGTTGCCTTCACATTCGATGCCACGGTTCCAGGGAGCATCACCATTATTTTCTTTGCAAAAGAAGGCGAAGACTGTAGCCTGTCGCCAATGAAGGAAAACCTGGAACCAGTCACTGTACATTTCCAACAGGGTCTTGGTCAGAAGTTCAGGCAACCTACCGGAACTGGGATTGACTTCTCAACGTTTGAGGAGTCAGAGTTGCTGAAAGAGGGTGATATGGACGTGTATCCTCTAGAAGTGAAGGCTGAGGCATCCCCAATCAACCAAATTGGAGCAGATGGAAATCCAATCCCTGGAACCATGAACTCTCAGATAACTAAGGCAGTGTTTGAGAAGGAGAAAGGTGAATACCAGGTGAGGGTGGTGAAACAGATCTTGTGGGTGAATGGCATGAGGTATGAATTGCAGGAGATTTATGGGATTGGGAACTCTGTTGATGGTGATTTTGACAGCAATGATCCAGGAAAAGAATGTGTTATCTGCTTGTCGGAACCTCGGGACACAACTGTCCTTCCCTGTCGACATATGTGTATGTGCAGTGGGTGTGCTAAAGTTTTGAGGTTCCAAACGGACCGGTGCCCTATTTGCCGACAACTAGTCGAGAGACTTCTGGAGATAAAGGTCAGCAATGGGTCTGACGACTGA 1089 0.5234 MGNIGSSSVNGRRRHGSRRSHPPPPPPQPPQPEITPNQYVFAAPYPTQYPNPNPPQYYQYPGFYPPPPAAMPVPLPAPYDHHHRGGPPPHMDPAHANFVAGRYSCGPVVPPHAPYVEHQKAVTIRNDVNLKKETLRLEPDEEHPGRFLVAFTFDATVPGSITIIFFAKEGEDCSLSPMKENLEPVTVHFQQGLGQKFRQPTGTGIDFSTFEESELLKEGDMDVYPLEVKAEASPINQIGADGNPIPGTMNSQITKAVFEKEKGEYQVRVVKQILWVNGMRYELQEIYGIGNSVDGDFDSNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTDRCPICRQLVERLLEIKVSNGSDD* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0644 362 SUPERFAMILY RING/U-box 305 350 - -
Vvi8g0644 362 MobiDBLite consensus disorder prediction 1 54 - -
Vvi8g0644 362 ProSiteProfiles Zinc finger RING-type profile. 306 345 IPR001841 -
Vvi8g0644 362 FunFam probable E3 ubiquitin-protein ligase LOG2 290 355 - -
Vvi8g0644 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 291 355 IPR013083 -
Vvi8g0644 362 Pfam Zinc finger, C3HC4 type (RING finger) 304 350 - -
Vvi8g0644 362 CDD mRING-HC-C3HC5_MGRN1-like 304 345 IPR045195 -
Vvi8g0644 362 PANTHER MAHOGUNIN 1 356 IPR045194 GO:0061630
Vvi8g0644 362 SMART ring_2 306 344 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0644 Vvi-Chr8 13026317 13030056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0644 105 325 C3H Transcription Factor Family AT3G09770 65.639 2.61e-98 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0644 - - vvi:100260106 647.891