Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi8g0643 ATGAAGTTCTCTTTTTCTTTCTCAAATTGCTTCTCCCCATCATCACCGCCTGAAGTTGATCGAAGCAGCAGCAGCGGGCAAGAAACAGGAGGAAACACTAGTGAAAAATTTCAAGTCTTCTCTTATAAAGAATTGAAAATCGCCACAGATAGCTTCCACCCATCAAACAAGATTGGTGAAGGAGGCTTTGGTTCTGTCTACAAGGGCCAGCTAAGAGATGGGACCACAGTGGCTGTAAAGGTGCTTTCAGTTGAAATTGAATCGATGCGAGGGGAGAGGGAGTTTGTCTCTGAGTTATCCGCACTGACAGATATCAAGCATGAAAATCTGGTTACCCTTCAAGGATGTTGCGTCGAGGGAGCTAGCAGATTTTTGGTTTATGATTATATGGAGAACAATAGCCTTGCACAAACCTTACTTGGTGCAAAGCAGAACAGGATGGAATTTGGTTGGGAAGCAAGGCGGGGCATTTCACTGGGAGTAGGTCGGGGACTCGCCTATCTCCATGAGGAAGTTCAACCCCATATCATACATCGGGATATTAAGGCTGCCAATATACTTCTAGATCAGAATCTCGCCCCCAAAATCTCAGATTTTGGCTTATCAAAGCTGTTTGTAGATAGCAGATCTCATATTAGTACTCGTGTTGCCGGGACATTAGGCTATCTTGCTCCAGAATATGCTCTTAGCGGGCGTTTGACAAGAAAATCAGATGTTTACAGTTTTGGAGTGCTCCTCCTTGAAATTATCAGTGGCCACTCAGTCGTGGAATATGACTTAGAACACGGCGAACATTATTTGGTCGAAAAGGCATGGGAAATGTACACGGATAACAAACTTCTGCAGCTAGTCGACCCCACGCTAAAGGACTTCCCTGAAGAAGAAGCTATTCAATTCTTAAAGGTGGGCCTACTTTGTGTGCAAGAGATCAGCGGCCTTCGCCCCCGAATGTCAGCAGCCGTGAAGATGTTGACTAATGAGATCAATGTTAATGATGTTCATATATCACAACCGGGACTTCTTTCAGATCTCACCGCCGTTAAAATAGGCCACAGGCGCTCTTTTCCAACCATTTCCTCCAAGGCCTCCACCAGTACCAGCACGCAGAGCGCCAACACAAACCCATCCTTGACTGGGAGCTCTGGTCCCCTTAACATGGATGCTGTATTATTTGATGTTAAATCTGAGTCTCATAGATAG 1200 0.4533 MKFSFSFSNCFSPSSPPEVDRSSSSGQETGGNTSEKFQVFSYKELKIATDSFHPSNKIGEGGFGSVYKGQLRDGTTVAVKVLSVEIESMRGEREFVSELSALTDIKHENLVTLQGCCVEGASRFLVYDYMENNSLAQTLLGAKQNRMEFGWEARRGISLGVGRGLAYLHEEVQPHIIHRDIKAANILLDQNLAPKISDFGLSKLFVDSRSHISTRVAGTLGYLAPEYALSGRLTRKSDVYSFGVLLLEIISGHSVVEYDLEHGEHYLVEKAWEMYTDNKLLQLVDPTLKDFPEEEAIQFLKVGLLCVQEISGLRPRMSAAVKMLTNEINVNDVHISQPGLLSDLTAVKIGHRRSFPTISSKASTSTSTQSANTNPSLTGSSGPLNMDAVLFDVKSESHR* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi8g0643 399 MobiDBLite consensus disorder prediction 1 33 - -
Vvi8g0643 399 ProSiteProfiles Protein kinase domain profile. 52 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0643 399 FunFam Serine/threonine-protein kinase receptor 22 129 - -
Vvi8g0643 399 Pfam Protein kinase domain 53 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0643 399 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 35 369 - -
Vvi8g0643 399 ProSitePatterns Protein kinases ATP-binding region signature. 58 80 IPR017441 GO:0005524
Vvi8g0643 399 ProSitePatterns Serine/Threonine protein kinases active-site signature. 176 188 IPR008271 GO:0004672|GO:0006468
Vvi8g0643 399 SUPERFAMILY Protein kinase-like (PK-like) 32 324 IPR011009 -
Vvi8g0643 399 FunFam Putative LRR receptor-like serine/threonine-protein kinase 130 336 - -
Vvi8g0643 399 Gene3D Transferase(Phosphotransferase) domain 1 130 337 - -
Vvi8g0643 399 MobiDBLite consensus disorder prediction 358 383 - -
Vvi8g0643 399 CDD STKc_IRAK 58 326 - -
Vvi8g0643 399 SMART serkin_6 52 300 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi8g0643 399 Gene3D Phosphorylase Kinase; domain 1 18 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi8g0643 Vvi-Chr8 13018307 13020215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi8g0643 40 345 Receptor kinase-like Gene Family AT1G56120 52.941 9.31e-104 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vvi8g0643 Pkinase 9.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi8g0643 - - vvi:100255008 755.747