LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi8g0642	ATGCCTATCCTCAACGCCCTTTCTCCACTTGTCCCTCTTCTCCTTCTCCTTCTCCTTCTCCTTTTGTGCATTCCCACTTCGGGGTTCGGATCCATGGGACCCATCTCCGCCGCTTTCGGCGAACATGGTTTCTTCTGCGCTATCGACGCCGGCGGCGAACAGAATGTAATATGTTGGGGAAAGAACAGTTCTTCGTTTCCCACCCCTTCTGCGTCTTTTAGCAACATTCCTCCCATGTCAGCTCTCTCCGGCGGGAATGGATTTCTCTGTGGCATTTTGGCGAACACGTCGCAGGCGTATTGTTGGAGCTTGGTTGCTTCGGGCATAAATCTCGTTCCTTCGGTGTTTCGGAACACCGCTTATTCACATGTCGCGGCGGGCAAGAATCACGTGTGTGCTATCAGAGGTTCTTATTACTCTGATAATGATTCGGGGACTATTGATTGCTGGGTCATAAGTGGAAGACCAAATAATAGTTTGGCTTCTGTTGAGAATAGTAATTTTGTTGATCAGTCTATTAATAGTCTTGTTTTTAGGAAGGTTGTGTCTGGGGAGGGGTTTAGTTGTGGTGGTATTAGAGAAGGTGGCATTGTTTGCTGGGGACCGAACGCCTCCAAGTTGGGGGTTTCTGGGGTATCGGAGAATTTTAAAGCATTAGCTTCAGGGAGGGGTTCTGTTTGTGGGATTTCAGGGGTTTCTGGTGAGGTGACGTGTTGGGGCGATAATGATACTTCTGGTGCGCCTCCAATCGGTACTCGATTCATAGCACTGTCTGCTGGTGCCAGACACTTTTGTGGGATTAGAGAAGACACTCACGAAGTTGGGTGTTGGGGGAGCTTTAATTCTTCACTGGTTCCAAAGGGTCCTGGGTTTATGGCGATTGCTTCATCTGATTTCACTACCTGTGGTATTAGGGAAGATGATTTGGTCCTTGCTTGCTGGTTTGCAAATTTGTCGTCACCGCCTGACTCTGATCCTCCATTGCAGCTGTGCAGTCCGGGACTTTGTACTCCTGGTCCTTGTGATGAGGGGCAGTTTGCTTATAATGCAAGCATCCTCAATGAGCCAGATTTGACTAGCCTGTGTGTTAGAAAAGATCTAAGCATTTGTTCACCTTGTGGGCTGAATTGTTCTGAAGGGTACTTCCAGTCTAGTTCATGTACCAAGAACGTGGACAGAGTATGCACAGCTTGTTCTCTTTGCCAGAATAGCTCTTGTTGGGATATTTGTGGATTTCAATCATCATCAGAGATGAGGCAAAAGCATCGGCATCAATTTGAAAGATTAGCACTCATAGTTGGGTCTTCTGTTTTGGGTTGCTTGTTGATATTAATTGGTTGGTGTCTTCTTCCTCGTTTTATTGGCACCAGAAATGAAGAAGGGGTTAAAAAACAATTTACTTCTTGCATGGGTAAACCAGTGCTGGAAACTGACATTGATGCGGATTCAAATCTTTCTGTGTCTGCAGCCCCATGTCTTGGAACAGCTCAAGTATTCCGGCTCTCAGAACTAAAGGATGCCACTAATGGGTTCAAGGAGTTTAATGAACTTGGCAGGGGAAACTATGGCTTTGTGTATAAAGCTGTCCTCGCAGATGGGCGGCAAGTAGCTGTTAAAAGGGCCAATGCTGCCACAATAATCCACACCAACAGCCGAGACTTTGAAATGGAGTTGGAAGTTCTTTGCAAAGTTCGGCACTGTAATATTGTGAACTTGTTGGGTTACTGCTCAGAGATGGGAGAGAGACTGCTTGTTTATGAGTTTATGCCCCATGGGACATTACATGACCACCTCCATGGTGGCCTTTCTCCTTTAAATTGGGGTCTTAGATTGAAGATTGCCATGCAGGCAGCAAAGGGGCTGGAGTATCTTCACAAGGAAGCTGTACCTCCTATTATCCACAGAGATGTCAAGACTTCAAATATTCTTTTGGATTCTGATTGGGGAGCACGAATTGCGGATTTTGGGCTTCTTATTCCAAATGATAGGGATTTCAATGGAGACATGAAAAGTGATGTTTACAATTTTGGAATTGTGCTGCTGGAGATTCTCAGTGGTAGGAAAGCTTATGACAGAGATTACATGCCACCAAGTATAGTTGAGTGGGCAGTACCGCGCATTAGACAGGGCAAGGCTGGTGTTATCATCGATTGTTATACAGCTCTTCCAAGAAATGTTGAACCTCTACTTAAGCTGGCTGATATAGCAGACCTAGCTGTGAGGGAAAATCCTAGTGAGCGTCCCACCATGTCAGATGTGGCAATCTGGTTAGAGCAAATTGTGAAGGATGGATTGATTTTGTAG	2304	0.4583	MPILNALSPLVPLLLLLLLLLLCIPTSGFGSMGPISAAFGEHGFFCAIDAGGEQNVICWGKNSSSFPTPSASFSNIPPMSALSGGNGFLCGILANTSQAYCWSLVASGINLVPSVFRNTAYSHVAAGKNHVCAIRGSYYSDNDSGTIDCWVISGRPNNSLASVENSNFVDQSINSLVFRKVVSGEGFSCGGIREGGIVCWGPNASKLGVSGVSENFKALASGRGSVCGISGVSGEVTCWGDNDTSGAPPIGTRFIALSAGARHFCGIREDTHEVGCWGSFNSSLVPKGPGFMAIASSDFTTCGIREDDLVLACWFANLSSPPDSDPPLQLCSPGLCTPGPCDEGQFAYNASILNEPDLTSLCVRKDLSICSPCGLNCSEGYFQSSSCTKNVDRVCTACSLCQNSSCWDICGFQSSSEMRQKHRHQFERLALIVGSSVLGCLLILIGWCLLPRFIGTRNEEGVKKQFTSCMGKPVLETDIDADSNLSVSAAPCLGTAQVFRLSELKDATNGFKEFNELGRGNYGFVYKAVLADGRQVAVKRANAATIIHTNSRDFEMELEVLCKVRHCNIVNLLGYCSEMGERLLVYEFMPHGTLHDHLHGGLSPLNWGLRLKIAMQAAKGLEYLHKEAVPPIIHRDVKTSNILLDSDWGARIADFGLLIPNDRDFNGDMKSDVYNFGIVLLEILSGRKAYDRDYMPPSIVEWAVPRIRQGKAGVIIDCYTALPRNVEPLLKLADIADLAVRENPSERPTMSDVAIWLEQIVKDGLIL*	768

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi8g0642	767	SUPERFAMILY	RCC1/BLIP-II	176	326	IPR009091	-
	Vvi8g0642	767	FunFam	-	28	210	-	-
	Vvi8g0642	767	FunFam	Serine/threonine-protein kinase-like protein CCR1	589	665	-	-
	Vvi8g0642	767	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	632	644	IPR008271	GO:0004672\|GO:0006468
	Vvi8g0642	767	ProSiteProfiles	Protein kinase domain profile.	511	757	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi8g0642	767	PANTHER	SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4	13	761	-	-
	Vvi8g0642	767	Gene3D	Phosphorylase Kinase; domain 1	478	588	-	-
	Vvi8g0642	767	Gene3D	-	209	320	IPR009091	-
	Vvi8g0642	767	FunFam	serine/threonine-protein kinase-like protein CCR1	480	588	-	-
	Vvi8g0642	767	Gene3D	Transferase(Phosphotransferase) domain 1	665	764	-	-
	Vvi8g0642	767	Gene3D	Transferase(Phosphotransferase) domain 1	589	664	-	-
	Vvi8g0642	767	ProSitePatterns	Protein kinases ATP-binding region signature.	517	539	IPR017441	GO:0005524
	Vvi8g0642	767	SUPERFAMILY	RCC1/BLIP-II	41	135	IPR009091	-
	Vvi8g0642	767	ProSiteProfiles	TNFR/NGFR family cysteine-rich region domain profile.	340	395	IPR001368	GO:0005515
	Vvi8g0642	767	Gene3D	-	20	205	IPR009091	-
	Vvi8g0642	767	SMART	serkin_6	511	757	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi8g0642	767	Pfam	Protein tyrosine and serine/threonine kinase	515	658	IPR001245	GO:0004672\|GO:0006468
	Vvi8g0642	767	SUPERFAMILY	Protein kinase-like (PK-like)	494	757	IPR011009	-
	Vvi8g0642	767	FunFam	Serine/threonine-protein kinase-like protein CCR1	666	764	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi8g0642	Vvi-Chr8	13007598	13009901	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi8g0642	13	759	Receptor kinase-like Gene Family	AT3G59420	34.394	1.53e-118	377

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-XV	Vvi8g0642		Pkinase	1.2e-31	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi8g0642	-		-	vvi:100251706	1516.9